Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 16 curated entries in PaperBLAST's database that match '2.5.1.49' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS18310: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:		 PaperBLAST

metY / P94890: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) from Leptospira meyeri
P94890: O-acetylhomoserine aminocarboxypropyltransferase (EC 2.5.1.49) from Leptospira meyeri

 53% id,
98% cov

oah / Q2RWB7: O-acetylhomoserine aminocarboxypropyltransferase (EC 2.5.1.49) from Rhodospirillum rubrum

 53% id,
98% cov

CYSD_SCHPO / O13326: Homocysteine synthase; O-acetylhomoserine sulfhydrylase; OAH SHL; OAH sulfhydrylase; EC 2.5.1.49 from Schizosaccharomyces pombe
SPBC428.11 / RF|NP_595189.1: homocysteine synthase Met17; EC 2.5.1.49 from Schizosaccharomyces pombe

 52% id,
98% cov

More...

HSERO_RS16440: hypothetical protein
is similar to:		 PaperBLAST

CYSD_SCHPO / O13326: Homocysteine synthase; O-acetylhomoserine sulfhydrylase; OAH SHL; OAH sulfhydrylase; EC 2.5.1.49 from Schizosaccharomyces pombe
SPBC428.11 / RF|NP_595189.1: homocysteine synthase Met17; EC 2.5.1.49 from Schizosaccharomyces pombe

 36% id,
98% cov

CYSD_EMENI / P50125: Homocysteine synthase; O-acetylhomoserine sulfhydrylase; OAH SHL; OAH sulfhydrylase; EC 2.5.1.49 from Emericella nidulans
cysD / GI|2605905: O-acetylhomoserine (thiol)-lyase; EC 2.5.1.49 from Emericella nidulans

 35% id,
98% cov

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae
met17 / P06106: Met17 (EC 2.5.1.49) from Saccharomyces cerevisiae

 34% id,
98% cov

More...

HSERO_RS14995: cystathionine beta-lyase
is similar to:		 PaperBLAST

Ga0059261_3194: O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) from Sphingomonas koreensis

 30% id,
87% cov

oah / Q2RWB7: O-acetylhomoserine aminocarboxypropyltransferase (EC 2.5.1.49) from Rhodospirillum rubrum

 31% id,
52% cov

CYSD_EMENI / P50125: Homocysteine synthase; O-acetylhomoserine sulfhydrylase; OAH SHL; OAH sulfhydrylase; EC 2.5.1.49 from Emericella nidulans
cysD / GI|2605905: O-acetylhomoserine (thiol)-lyase; EC 2.5.1.49 from Emericella nidulans

 30% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4202092-4203432 (frame +1) on NC_014323
is similar to:		 PaperBLAST

metY / P94890: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) from Leptospira meyeri
P94890: O-acetylhomoserine aminocarboxypropyltransferase (EC 2.5.1.49) from Leptospira meyeri
Also see hits to annotated proteins above

 53% id,
100% cov

Ga0059261_3194: O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) from Sphingomonas koreensis
Also see hits to annotated proteins above

 35% id,
57% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory