Curated BLAST for Genomes


Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 31 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS18435: MFS transporter
is similar to:

SERC_ECOLI / P23721: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC from Escherichia coli
SerC / b0907: phosphoserine/phosphohydroxythreonine aminotransferase (EC; EC from Escherichia coli
serC: phosphoserine aminotransferase; EC from Escherichia coli
serC / P23721: phosphoserine/phosphohydroxythreonine aminotransferase (EC; EC from Escherichia coli
P23721: phosphoserine transaminase (EC from Escherichia coli

55% id,
99% cov

Q2F5M8: phosphoserine transaminase (EC from Bombyx mori

50% id,
99% cov

SERC_DROME / Q9VAN0: Probable phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; EC from Drosophila melanogaster

50% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory