Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS11500: ribokinase
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

100% id,
100% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

54% id,
97% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

52% id,
97% cov

More...

HSERO_RS05105: ribokinase
is similar to:
PaperBLAST

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

58% id,
100% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

60% id,
93% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

41% id,
98% cov

More...

HSERO_RS08715: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

30% id,
93% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

30% id,
88% cov

RBSK_STAAC / A0A0H2WZY4: Ribokinase; RK; EC 2.7.1.15 from Staphylococcus aureus
A0A0H2WZY4: ribokinase (EC 2.7.1.15) from Staphylococcus aureus

30% id,
87% cov

More...

HSERO_RS07545: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

27% id,
89% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

26% id,
82% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

27% id,
80% cov

More...

HSERO_RS18385: heptose 1-phosphate adenyltransferase
is similar to:
PaperBLAST

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

25% id,
97% cov

A0A0H2UL04: ribokinase (EC 2.7.1.15) from Vibrio cholerae

24% id,
96% cov

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

23% id,
55% cov

More...

HSERO_RS02180: fructokinase
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

23% id,
99% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

35% id,
27% cov

P71913: ribokinase (EC 2.7.1.15) from Mycobacterium tuberculosis

30% id,
31% cov

HSERO_RS12125: 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

B8CWQ8: ribokinase (EC 2.7.1.15) from Halothermothrix orenii

27% id,
55% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

29% id,
43% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

31% id,
39% cov

More...

HSERO_RS17335: ribose 5-phosphate isomerase
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

34% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory