Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 10 curated entries in PaperBLAST's database that match '2.7.1.5' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS22200: L-fuculose kinase
is similar to:
PaperBLAST

HSERO_RS22200: Rhamnulokinase (EC 2.7.1.5) from Herbaspirillum seropedicae

100% id,
100% cov

SMc03003: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Sinorhizobium meliloti

45% id,
97% cov

rhaK / Q7BSH0: rhamnulokinase (EC 2.7.1.5) from Rhizobium leguminosarum

43% id,
97% cov

More...

HSERO_RS04875: glycerol kinase
is similar to:
PaperBLAST

BWI76_RS00680: Rhamnulokinase (EC 2.7.1.5) from Klebsiella michiganensis

23% id,
97% cov

HSERO_RS02220: xylulokinase
is similar to:
PaperBLAST

RHAB_ECOLI / P32171: L-Rhamnulokinase; RhaB; RhuK; ATP:L-rhamnulose phosphotransferase; L-rhamnulose 1-kinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli
RhaB / b3904: rhamnulokinase (EC 2.7.1.5) from Escherichia coli
rhaB / P32171: rhamnulokinase (EC 2.7.1.5) from Escherichia coli

22% id,
44% cov

RHAB_ECOUT / Q1R415: Rhamnulokinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli

22% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory