Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 60 curated entries in PaperBLAST's database that match '2.7.2.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS10695: aspartate kinase
is similar to:		 PaperBLAST

AK_PSEFS / C3JXY0: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas fluorescens

 65% id,
99% cov

AK_PSEPK / Q88EI9: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas putida

 64% id,
99% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

 63% id,
99% cov

More...

HSERO_RS10460: homoserine dehydrogenase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 33% id,
54% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

 27% id,
43% cov

AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

 28% id,
36% cov

HSERO_RS10885: uridylate kinase
is similar to:		 PaperBLAST

AK_CORFL / P41398: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens
lysC / GB|AAA23293.1: aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens

 29% id,
61% cov

AK_CORGL / P26512: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium glutamicum
lysC: aspartate kinase 2; EC 2.7.2.4 from Corynebacterium glutamicum
lysCα / P26512: aspartokinase α subunit (EC 2.7.2.4) from Corynebacterium glutamicum
lysCβ / P26512: aspartokinase β subunit (EC 2.7.2.4) from Corynebacterium glutamicum
P26512: aspartate kinase (EC 2.7.2.4) from Corynebacterium glutamicum

 29% id,
61% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

 28% id,
60% cov

More...

HSERO_RS00950: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 33% id,
43% cov

HSERO_RS13690: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 32% id,
41% cov

HSERO_RS01815: gamma-glutamyl kinase
is similar to:		 PaperBLAST

AK3_ECOLI / P08660: Lysine-sensitive aspartokinase 3; Aspartate kinase III; AKIII; Lysine-sensitive aspartokinase III; EC 2.7.2.4 from Escherichia coli
Apk / b4024: aspartate kinase III (EC 2.7.2.4) from Escherichia coli
lysC / P08660: aspartate kinase III (EC 2.7.2.4) from Escherichia coli
P08660: aspartate kinase (EC 2.7.2.4) from Escherichia coli

 25% id,
28% cov

AK2_BACSU / P08495: Aspartokinase 2; Aspartate kinase 2; Aspartokinase II; EC 2.7.2.4 from Bacillus subtilis
lysC / GB|CAA99580.1: aspartate kinase 2; EC 2.7.2.4 from Bacillus subtilis
lysCα / P08495: aspartate kinase II α subunit (EC 2.7.2.4) from Bacillus subtilis
lysCβ / P08495: aspartate kinase II β subunit (EC 2.7.2.4) from Bacillus subtilis
P08495: aspartate kinase (EC 2.7.2.4) from Bacillus subtilis

 38% id,
15% cov

AK_YEAST / P10869: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Saccharomyces cerevisiae
P10869: aspartate kinase (EC 2.7.2.4) from Saccharomyces cerevisiae

 33% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2353458-2354837 (frame +3) on NC_014323
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima
Also see hits to annotated proteins above

 33% id,
56% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory