Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 38 curated entries in PaperBLAST's database that match '2.7.6.1'.

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS19570: ribose-phosphate pyrophosphokinase is similar to:	PaperBLAST
KPRS_ECOLI / P0A717: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Escherichia coli DnaR / b1207: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli prs / P0A717: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli P0A719: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli	64% id, 99% cov
KPRS_SALTY / P0A1V6: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Salmonella typhimurium	63% id, 99% cov
KPRS_BACSU / P14193: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Bacillus subtilis	55% id, 98% cov
E7EAU9: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Bacillus amyloliquefaciens	55% id, 98% cov
KPR2_SCHPO / O94413: Ribose-phosphate pyrophosphokinase 2; Phosphoribosyl pyrophosphate synthase 2; EC 2.7.6.1 from Schizosaccharomyces pombe	47% id, 99% cov
Q08CA5: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Danio rerio	47% id, 99% cov
Q4KME9: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Danio rerio	47% id, 99% cov
PRPS1_HUMAN / P60891: Ribose-phosphate pyrophosphokinase 1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I; EC 2.7.6.1 from Homo sapiens PRPS1_MOUSE / Q9D7G0: Ribose-phosphate pyrophosphokinase 1; Phosphoribosyl pyrophosphate synthase I; PRS-I; EC 2.7.6.1 from Mus musculus PRPS1 / P60891: Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) from Homo sapiens P60891: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Homo sapiens	47% id, 99% cov
PRPS2 / P11908: Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) from Homo sapiens	47% id, 99% cov
Q5SHU3: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Thermus thermophilus	46% id, 99% cov
PRPS1L1 / P21108: Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) from Homo sapiens	45% id, 99% cov
KPR3_YEAST / P38689: Ribose-phosphate pyrophosphokinase 3; Phosphoribosyl pyrophosphate synthase 3; EC 2.7.6.1 from Saccharomyces cerevisiae	47% id, 95% cov
H9D1K2: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Culex pipiens	45% id, 99% cov
KPRS_MYCTU / P9WKE3: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Mycobacterium tuberculosis	46% id, 96% cov
A0R3C8: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Mycolicibacterium smegmatis	46% id, 96% cov
KPR4_YEAST / P38063: Ribose-phosphate pyrophosphokinase 4; Phosphoribosyl pyrophosphate synthase 4; EC 2.7.6.1 from Saccharomyces cerevisiae	44% id, 97% cov
PRS1: ribose-phosphate pyrophosphokinase; EC 2.7.6.1 from Candida albicans	43% id, 98% cov
KPR2_YEAST / P38620: Ribose-phosphate pyrophosphokinase 2; Phosphoribosyl pyrophosphate synthase 2; EC 2.7.6.1 from Saccharomyces cerevisiae	42% id, 99% cov
KPRS2_STRP6 / Q5XC85: Putative ribose-phosphate pyrophosphokinase 2; RPPK 2; 5-phospho-D-ribosyl alpha-1-diphosphate synthase 2; Phosphoribosyl diphosphate synthase 2; Phosphoribosyl pyrophosphate synthase 2; P-Rib-PP synthase 2; PRPP synthase 2; PRPPase 2; EC 2.7.6.1 from Streptococcus pyogenes	42% id, 96% cov
KPRS_MYCGE / P47304: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Mycoplasma genitalium	46% id, 85% cov
Q9VT33: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Drosophila melanogaster	45% id, 87% cov
KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis	34% id, 90% cov
KPRS_METJA / Q58761: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Methanocaldococcus jannaschii Q58761: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Methanocaldococcus jannaschii	31% id, 94% cov
Q97Z86: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus	29% id, 94% cov
KPR1_SCHPO / P41831: Ribose-phosphate pyrophosphokinase 1; Phosphoribosyl pyrophosphate synthase 1; EC 2.7.6.1 from Schizosaccharomyces pombe	37% id, 66% cov
KPRS_THEVO / Q97CA5: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermoplasma volcanium Q97CA5: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Thermoplasma volcanium	26% id, 89% cov
KPR1_YEAST / P32895: Ribose-phosphate pyrophosphokinase 1; Phosphoribosyl pyrophosphate synthase 1; EC 2.7.6.1 from Saccharomyces cerevisiae	43% id, 48% cov
KPR5_YEAST / Q12265: Ribose-phosphate pyrophosphokinase 5; Phosphoribosyl pyrophosphate synthase 5; EC 2.7.6.1 from Saccharomyces cerevisiae	41% id, 25% cov
KPR1_YEAST / P32895: Ribose-phosphate pyrophosphokinase 1; Phosphoribosyl pyrophosphate synthase 1; EC 2.7.6.1 from Saccharomyces cerevisiae	35% id, 27% cov
KPR5_YEAST / Q12265: Ribose-phosphate pyrophosphokinase 5; Phosphoribosyl pyrophosphate synthase 5; EC 2.7.6.1 from Saccharomyces cerevisiae	39% id, 22% cov
KPR5_YEAST / Q12265: Ribose-phosphate pyrophosphokinase 5; Phosphoribosyl pyrophosphate synthase 5; EC 2.7.6.1 from Saccharomyces cerevisiae	44% id, 19% cov
Q5AYB9: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Aspergillus nidulans	40% id, 19% cov
Q5AYB9: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Aspergillus nidulans	40% id, 19% cov
More...

HSERO_RS16445: amidophosphoribosyltransferase is similar to:	PaperBLAST
KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis	26% id, 67% cov
KPRS_METJA / Q58761: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Methanocaldococcus jannaschii Q58761: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Methanocaldococcus jannaschii	26% id, 65% cov
A0R3C8: ribose-phosphate diphosphokinase (EC 2.7.6.1) from Mycolicibacterium smegmatis	31% id, 30% cov

HSERO_RS20810: amidophosphoribosyltransferase is similar to:	PaperBLAST
KPRS_THEKO / O52958: Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis	29% id, 29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory