Curated BLAST
Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 13 curated entries in PaperBLAST's database that match '3.1.1.15' as complete word(s).
These curated entries have 11 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
HSERO_RS05225: gluconolaconase
is similar to: | PaperBLAST |
HSERO_RS05225: L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae | 100% id,
100% cov |
ARALA_AZOBR / Q1JUP5: L-arabinolactonase; EC 3.1.1.15 from Azospirillum brasilense | 52% id,
95% cov |
Shewana3_2088: L-arabinolactonase (EC 3.1.1.15) from Shewanella sp. | 38% id,
94% cov |
Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp. | 36% id,
92% cov |
XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
D4GP31: L-arabinonolactonase (EC 3.1.1.15); xylono-1,4-lactonase (EC 3.1.1.68) from Haloferax volcanii | 33% id,
98% cov |
PfGW456L13_2118: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens | 32% id,
99% cov |
SMc00883: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Sinorhizobium meliloti | 33% id,
96% cov |
AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens | 32% id,
96% cov |
PS417_11020: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas simiae | 31% id,
99% cov |
Pf6N2E2_5966: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens | 31% id,
96% cov |
Pf1N1B4_413: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens | 33% id,
91% cov |
More... |
HSERO_RS19370: gluconolactonase
is similar to: | PaperBLAST |
PS417_11020: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas simiae | 35% id,
97% cov |
Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp. | 36% id,
92% cov |
XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
D4GP31: L-arabinonolactonase (EC 3.1.1.15); xylono-1,4-lactonase (EC 3.1.1.68) from Haloferax volcanii | 34% id,
93% cov |
HSERO_RS05225: L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae | 33% id,
95% cov |
PfGW456L13_2118: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens | 33% id,
93% cov |
Pf6N2E2_5966: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens | 33% id,
93% cov |
Shewana3_2088: L-arabinolactonase (EC 3.1.1.15) from Shewanella sp. | 33% id,
92% cov |
Pf1N1B4_413: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens | 33% id,
87% cov |
Pf6N2E2_5966: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens | 46% id,
30% cov |
AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens | 35% id,
40% cov |
AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens | 45% id,
30% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory