Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 17 curated entries in PaperBLAST's database that match '3.1.1.25' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS05225: gluconolaconase
is similar to:
PaperBLAST

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

36% id,
92% cov

SMc00883: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Sinorhizobium meliloti

33% id,
96% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

32% id,
96% cov

HSERO_RS19370: gluconolactonase
is similar to:
PaperBLAST

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

36% id,
92% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

35% id,
40% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

45% id,
30% cov

HSERO_RS20090: gluconolactonase
is similar to:
PaperBLAST

B2LYJ5: 1,4-lactonase (EC 3.1.1.25) from Fusarium proliferatum

34% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4440185-4441702 (frame +2) on NC_014323
is similar to:
PaperBLAST

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.
Also see hits to annotated proteins above

36% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory