Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 185 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 140 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS11645: alpha-amylase
is similar to:
PaperBLAST

BAI67603.1: α-glucosidase (CmmB) (EC 3.2.1.20)

31% id,
93% cov

AAA25570.1: α-glucosidase (Agl) (EC 3.2.1.20)

33% id,
67% cov

BAE48285.1: α-glucosidase (Gsj) (EC 3.2.1.20)
Q33E90: alpha-glucosidase (EC 3.2.1.20) from Geobacillus sp.

36% id,
61% cov

More...

HSERO_RS20525: alpha-glucosidase
is similar to:
PaperBLAST

ABR26230.1: α-glucosidase (EC 3.2.1.20)

28% id,
90% cov

BAQ19546.1: α-glucosidase (AG31A;BspAG31A) (EC 3.2.1.20)

28% id,
90% cov

AAM23323.1: α-glucosidase (GluA;TTE0006) (EC 3.2.1.20)
Q8RDL1: alpha-glucosidase (EC 3.2.1.20) from Caldanaerobacter subterraneus

29% id,
86% cov

More...

HSERO_RS05150: galactonate dehydratase
is similar to:
PaperBLAST

Q2PCE2: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

24% id,
74% cov

HSERO_RS12500: malto-oligosyltrehalose trehalohydrolase
is similar to:
PaperBLAST

AAA57313.1: α-glucosidase (AglA) (EC 3.2.1.20)
AAZ54871.1: α-glucosidase (Tfu_0833) (EC 3.2.1.20)

36% id,
18% cov

CAB46746.1: α-glucosidase (maltase mal22) (EC 3.2.1.20)

33% id,
19% cov

BAL49684.1: α-glucosidase (AglA;HaG) (EC 3.2.1.20)

33% id,
18% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2629947-2633948 (frame +3) on NC_014323
is similar to:
PaperBLAST

BAI67603.1: α-glucosidase (CmmB) (EC 3.2.1.20)
Also see hits to annotated proteins above

31% id,
96% cov

AAB82328.1: α-glucosidase 2 (Mav2) (EC 3.2.1.20)
Also see hits to annotated proteins above

33% id,
60% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae
Also see hits to annotated proteins above

44% id,
41% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory