Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 529 curated entries in PaperBLAST's database that match '3.2.1.21' as complete word(s).

These curated entries have 444 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS23930: beta-D-glucoside glucohydrolase
is similar to:
PaperBLAST

AAL21070.1: β-glucosidase (BglX;STM2166) (EC 3.2.1.21)

61% id,
99% cov

YohA / b2132: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli
bglX / P33363: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli

59% id,
99% cov

AAA60495.1: β-glucosidase (BglX) (EC 3.2.1.21)

59% id,
96% cov

More...

HSERO_RS09685: beta-hexosaminidase
is similar to:
PaperBLAST

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC 3.2.1.21; EC 3.2.1.52 from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC 3.2.1.21|3.2.1.52|2.4.1.-)

26% id,
58% cov

HSERO_RS15970: peptidase
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

34% id,
36% cov

HSERO_RS20525: alpha-glucosidase
is similar to:
PaperBLAST

AGDC_EMENI / Q5AWI5: Alpha/beta-glucosidase agdC; EC 3.2.1.20; EC 3.2.1.21 from Emericella nidulans

31% id,
31% cov

HSERO_RS12945: hypothetical protein
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

33% id,
24% cov

HSERO_RS14805: membrane protein
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

31% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory