Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 331 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 255 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS01350: beta-galactosidase
is similar to:
PaperBLAST

ABI35985.1: β-galactosidase (EC 3.2.1.23)

54% id,
100% cov

BGAL_THETH / O69315: Beta-galactosidase; Beta-gal; Lactase; EC 3.2.1.23 from Thermus thermophilus
BAA28362.1: β-galactosidase (A4-β-Gal) (EC 3.2.1.23)

54% id,
100% cov

BGAL1_THESP / Q8GEA9: Beta-galactosidase BgaA; Beta-gal; EC 3.2.1.23 from Thermus sp.
AAN05443.1: β-galactosidase (BgaA) (EC 3.2.1.23)

54% id,
100% cov

More...

HSERO_RS23930: beta-D-glucoside glucohydrolase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

31% id,
79% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory