Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 241 curated entries in PaperBLAST's database that match '3.2.1.26' as complete word(s).

These curated entries have 195 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS11645: alpha-amylase
is similar to:
PaperBLAST

ams / G4T024: sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylotuvimicrobium alcaliphilum

30% id,
45% cov

HSERO_RS06295: membrane protein
is similar to:
PaperBLAST

AAA67876.1: invertase (LevJ) (EC 3.2.1.26)

54% id,
4% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory