Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 14 curated entries in PaperBLAST's database that match '3.2.1.48' as complete word(s).
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS11645: alpha-amylase is similar to: | PaperBLAST |
Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae | 45% id, 39% cov |
Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis | 31% id, 49% cov |
Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis | 27% id, 26% cov |
| HSERO_RS20525: alpha-glucosidase is similar to: | PaperBLAST |
BAA25370.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48) | 30% id, 16% cov |
SUIS_HUMAN / P14410: Sucrase-isomaltase, intestinal; EC 3.2.1.48; EC 3.2.1.10 from Homo sapiens | 30% id, 16% cov |
AAT18166.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48) | 30% id, 16% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2629947-2633948 (frame +3) on NC_014323 is similar to: | PaperBLAST |
Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae | 44% id, 41% cov |
Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis | 32% id, 51% cov |
Lawrence Berkeley National Laboratory