Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 36 curated entries in PaperBLAST's database that match '3.5.1.25' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS22760: N-acetylglucosamine-6-phosphate deacetylase
is similar to:
PaperBLAST

BPHYT_RS02730: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Burkholderia phytofirmans

65% id,
99% cov

PfGW456L13_4830: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Pseudomonas fluorescens

64% id,
99% cov

AO356_17550: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Pseudomonas fluorescens

64% id,
99% cov

More...

HSERO_RS02845: amidohydrolase
is similar to:
PaperBLAST

BPHYT_RS02730: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Burkholderia phytofirmans

29% id,
42% cov

PfGW456L13_4830: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Pseudomonas fluorescens

35% id,
19% cov

Q8Y5F6: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Listeria monocytogenes

34% id,
19% cov

More...

HSERO_RS08730: D-aminoacylase
is similar to:
PaperBLAST

Q8Y8E8: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Listeria monocytogenes

36% id,
24% cov

NAGA_LYSSH / Q84F86: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Lysinibacillus sphaericus

32% id,
17% cov

HSERO_RS02855: D-aminoacylase
is similar to:
PaperBLAST

NAGA_LYSSH / Q84F86: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Lysinibacillus sphaericus

34% id,
16% cov

HSERO_RS01155: peptidase M38
is similar to:
PaperBLAST

Q8DN83: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Streptococcus pneumoniae

35% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory