Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.30' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS13165: acylamide amidohydrolase
is similar to:
PaperBLAST

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

28% id,
100% cov

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

30% id,
86% cov

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

28% id,
92% cov

More...

HSERO_RS22865: NH(3)-dependent NAD(+) synthetase
is similar to:
PaperBLAST

B3IVI7: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

30% id,
89% cov

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

30% id,
89% cov

HSERO_RS09455: NAD synthetase
is similar to:
PaperBLAST

davA / Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida
Q88QV2: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

26% id,
98% cov

B3IVI7: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas putida

26% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory