Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 12 curated entries in PaperBLAST's database that match '3.5.1.94' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS21960: glutamine amidotransferase
is similar to:
PaperBLAST

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

37% id,
82% cov

AO353_29305: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

38% id,
77% cov

AO356_13140: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

38% id,
76% cov

More...

HSERO_RS11020: GMP synthase
is similar to:
PaperBLAST

AO356_13140: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

25% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory