Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 65 curated entries in PaperBLAST's database that match '3.5.3.1' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS00305: arginase is similar to:	PaperBLAST
N515DRAFT_0348: Arginase (EC 3.5.3.1) from Dyella japonica	67% id, 98% cov
Ac3H11_701: Arginase (EC 3.5.3.1) from Acidovorax sp.	69% id, 82% cov
ARGI_BACCD / P53608: Arginase; EC 3.5.3.1 from Bacillus caldovelox P53608: arginase (EC 3.5.3.1) from [Bacillus] caldovelox	43% id, 100% cov
A4IJM8: arginase (EC 3.5.3.1) from Geobacillus thermodenitrificans	42% id, 100% cov
ARGI_BACSU / P39138: Arginase; EC 3.5.3.1 from Bacillus subtilis argI / P39138: arginase (EC 3.5.3.1) from Bacillus subtilis P39138: arginase (EC 3.5.3.1) from Bacillus subtilis	40% id, 99% cov
arcA / P14012: arginase subunit (EC 3.5.3.1) from Agrobacterium fabrum	41% id, 93% cov
ARGI1_XENLA / P30759: Arginase-1; Arginase, hepatic; Type I arginase; EC 3.5.3.1 from Xenopus laevis	35% id, 96% cov
ARGI1_RAT / P07824: Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Rattus norvegicus P07824: arginase (EC 3.5.3.1) from Rattus norvegicus	36% id, 92% cov
ARGI1_HUMAN / P05089: Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Homo sapiens ARG1 / P05089: Arginase-1 (EC 3.5.3.1) from Homo sapiens P05089: arginase (EC 3.5.3.1) from Homo sapiens	36% id, 93% cov
A0A0D5ZYA4: arginase (EC 3.5.3.1) from Heteropneustes fossilis	38% id, 89% cov
ARGI1_MOUSE / Q61176: Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Mus musculus Q61176: arginase (EC 3.5.3.1) from Mus musculus	37% id, 89% cov
agaA: arginase; EC 3.5.3.1 from Emericella nidulans	34% id, 95% cov
Q4A3J2: arginase (EC 3.5.3.1) from Cyprinus carpio	36% id, 88% cov
ARGI2_HUMAN / P78540: Arginase-2, mitochondrial; Arginase II; Kidney-type arginase; Non-hepatic arginase; Type II arginase; EC 3.5.3.1 from Homo sapiens ARG2 / P78540: Arginase-2, mitochondrial (EC 3.5.3.1) from Homo sapiens P78540: arginase (EC 3.5.3.1) from Homo sapiens	37% id, 86% cov
ARGI2_MOUSE / O08691: Arginase-2, mitochondrial; Arginase II; Kidney-type arginase; Non-hepatic arginase; Type II arginase; EC 3.5.3.1 from Mus musculus	36% id, 86% cov
U6BQJ3: arginase (EC 3.5.3.1) from Heteropneustes fossilis	36% id, 87% cov
A0A1P8DAM2: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	34% id, 89% cov
Q4A3J0: arginase (EC 3.5.3.1) from Cyprinus carpio	36% id, 86% cov
Q4A3J1: arginase (EC 3.5.3.1) from Cyprinus carpio	36% id, 86% cov
Q4A4U9: arginase (EC 3.5.3.1) from Cyprinus carpio	36% id, 86% cov
I7KJN7: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	34% id, 89% cov
B5XDG2: arginase (EC 3.5.3.1) from Salmo salar	34% id, 89% cov
A0A1S3NED8: arginase (EC 3.5.3.1) from Salmo salar	34% id, 89% cov
O08701: arginase (EC 3.5.3.1) from Rattus norvegicus	35% id, 86% cov
A0A1S3R1W2: arginase (EC 3.5.3.1) from Salmo salar	35% id, 87% cov
A0A1P8DAN3: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	34% id, 87% cov
C0H9C1: arginase (EC 3.5.3.1) from Salmo salar	34% id, 87% cov
ARGI_NEUCR / P33280: Arginase; EC 3.5.3.1 from Neurospora crassa	36% id, 84% cov
Q4VK78: arginase (EC 3.5.3.1) from Oryctolagus cuniculus	35% id, 86% cov
A0A060YSI8: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	34% id, 87% cov
car3 / RF\|NP_593549.1: arginase Aru1; EC 3.5.3.1 from Schizosaccharomyces pombe	32% id, 92% cov
Q6TUJ5: arginase (EC 3.5.3.1) from Leishmania mexicana	31% id, 94% cov
car1 / RF\|NP_595133.1: arginase Car1; EC 3.5.3.1 from Schizosaccharomyces pombe	32% id, 90% cov
ARGI_ENTH1 / C4LSS0: Arginase; EhArg; EC 3.5.3.1 from Entamoeba histolytica C4LSS0: arginase (EC 3.5.3.1) from Entamoeba histolytica	30% id, 98% cov
ARGI_KLULA / Q6CLS8: Arginase; EC 3.5.3.1 from Kluyveromyces lactis	33% id, 87% cov
ARGI_YEAST / P00812: Arginase; EC 3.5.3.1 from Saccharomyces cerevisiae CAR1 / P00812: arginase subunit (EC 3.5.3.1) from Saccharomyces cerevisiae	32% id, 88% cov
O96394: arginase (EC 3.5.3.1) from Leishmania amazonensis	33% id, 85% cov
A0A145YEM9: arginase (EC 3.5.3.1) from Leishmania infantum	33% id, 85% cov
ARGI_PLABA / A0A509AF89: Arginase; EC 3.5.3.1 from Plasmodium berghei	28% id, 90% cov
Q6WVP6: arginase (EC 3.5.3.1) from Schistosoma mansoni	32% id, 79% cov
O25949: arginase (EC 3.5.3.1) from Helicobacter pylori	23% id, 96% cov
GDAH_HUMAN / Q9BSE5: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens	27% id, 75% cov
ARGI_PLAF7 / Q8I384: Arginase; PFA; PfArg; EC 3.5.3.1 from Plasmodium falciparum Q8I384: arginase (EC 3.5.3.1) from Plasmodium falciparum	31% id, 53% cov
More...

HSERO_RS08555: agmatinase is similar to:	PaperBLAST
GDAH_HUMAN / Q9BSE5: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens	62% id, 88% cov
GDAH_MOUSE / A2AS89: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Mus musculus	60% id, 84% cov
A4IJM8: arginase (EC 3.5.3.1) from Geobacillus thermodenitrificans	31% id, 96% cov
ARGI_BACCD / P53608: Arginase; EC 3.5.3.1 from Bacillus caldovelox P53608: arginase (EC 3.5.3.1) from [Bacillus] caldovelox	31% id, 96% cov
ARGI_BACSU / P39138: Arginase; EC 3.5.3.1 from Bacillus subtilis argI / P39138: arginase (EC 3.5.3.1) from Bacillus subtilis P39138: arginase (EC 3.5.3.1) from Bacillus subtilis	28% id, 97% cov
N515DRAFT_0348: Arginase (EC 3.5.3.1) from Dyella japonica	28% id, 96% cov
ARG2 / Q5UNS1: arginase (EC 3.5.3.1) from Solanum lycopersicum Q5UNS1: arginase (EC 3.5.3.1) from Solanum lycopersicum	33% id, 82% cov
ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula	32% id, 84% cov
ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana arginase / P46637: arginase (EC 3.5.3.1) from Arabidopsis thaliana	33% id, 81% cov
ARG1 / Q5UNS2: arginase (EC 3.5.3.1) from Solanum lycopersicum Q5UNS2: arginase (EC 3.5.3.1) from Solanum lycopersicum	32% id, 82% cov
ARGI1_ORYSI / B8AU84: Arginase 1, mitochondrial; Arginine amidohydrolase 1; EC 3.5.3.1 from Oryza sativa	32% id, 79% cov
O08701: arginase (EC 3.5.3.1) from Rattus norvegicus	28% id, 91% cov
ARGI2_MOUSE / O08691: Arginase-2, mitochondrial; Arginase II; Kidney-type arginase; Non-hepatic arginase; Type II arginase; EC 3.5.3.1 from Mus musculus	27% id, 91% cov
ARGI1_HUMAN / P05089: Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Homo sapiens ARG1 / P05089: Arginase-1 (EC 3.5.3.1) from Homo sapiens P05089: arginase (EC 3.5.3.1) from Homo sapiens	27% id, 92% cov
ARGI1_RAT / P07824: Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Rattus norvegicus P07824: arginase (EC 3.5.3.1) from Rattus norvegicus	26% id, 92% cov
ARGI2_ARATH / Q9ZPF5: Arginase 2, chloroplastic/mitochondrial; Agmatinase ARGAH2; Arginine amidohydrolase 2; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana	30% id, 80% cov
ARGI1_MOUSE / Q61176: Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Mus musculus Q61176: arginase (EC 3.5.3.1) from Mus musculus	26% id, 91% cov
U6BQJ3: arginase (EC 3.5.3.1) from Heteropneustes fossilis	28% id, 87% cov
A0A1P8DAM2: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	26% id, 93% cov
Q4A3J2: arginase (EC 3.5.3.1) from Cyprinus carpio	28% id, 86% cov
B5XDG2: arginase (EC 3.5.3.1) from Salmo salar	25% id, 93% cov
Q4A3J1: arginase (EC 3.5.3.1) from Cyprinus carpio	25% id, 93% cov
A0A1S3NED8: arginase (EC 3.5.3.1) from Salmo salar	27% id, 87% cov
A0A0D5ZYA4: arginase (EC 3.5.3.1) from Heteropneustes fossilis	27% id, 86% cov
C0H9C1: arginase (EC 3.5.3.1) from Salmo salar	27% id, 87% cov
ARGI_KLULA / Q6CLS8: Arginase; EC 3.5.3.1 from Kluyveromyces lactis	27% id, 87% cov
Q4A3J0: arginase (EC 3.5.3.1) from Cyprinus carpio	25% id, 93% cov
Q4A4U9: arginase (EC 3.5.3.1) from Cyprinus carpio	25% id, 93% cov
A0A1P8DAN3: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	27% id, 87% cov
A0A1S3R1W2: arginase (EC 3.5.3.1) from Salmo salar	27% id, 87% cov
Q4VK78: arginase (EC 3.5.3.1) from Oryctolagus cuniculus	27% id, 85% cov
A0A060YSI8: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	26% id, 87% cov
car3 / RF\|NP_593549.1: arginase Aru1; EC 3.5.3.1 from Schizosaccharomyces pombe	25% id, 92% cov
ARGI_ENTH1 / C4LSS0: Arginase; EhArg; EC 3.5.3.1 from Entamoeba histolytica C4LSS0: arginase (EC 3.5.3.1) from Entamoeba histolytica	23% id, 98% cov
ARGI_YEAST / P00812: Arginase; EC 3.5.3.1 from Saccharomyces cerevisiae CAR1 / P00812: arginase subunit (EC 3.5.3.1) from Saccharomyces cerevisiae	25% id, 90% cov
O96394: arginase (EC 3.5.3.1) from Leishmania amazonensis	27% id, 81% cov
Q6TUJ5: arginase (EC 3.5.3.1) from Leishmania mexicana	27% id, 81% cov
I7KJN7: arginase (EC 3.5.3.1) from Oncorhynchus mykiss	25% id, 87% cov
ARGI1_XENLA / P30759: Arginase-1; Arginase, hepatic; Type I arginase; EC 3.5.3.1 from Xenopus laevis	27% id, 79% cov
agaA: arginase; EC 3.5.3.1 from Emericella nidulans	32% id, 63% cov
A0A145YEM9: arginase (EC 3.5.3.1) from Leishmania infantum	28% id, 69% cov
Q6WVP6: arginase (EC 3.5.3.1) from Schistosoma mansoni	24% id, 79% cov
ARGI_NEUCR / P33280: Arginase; EC 3.5.3.1 from Neurospora crassa	30% id, 60% cov
ARGI2_HUMAN / P78540: Arginase-2, mitochondrial; Arginase II; Kidney-type arginase; Non-hepatic arginase; Type II arginase; EC 3.5.3.1 from Homo sapiens ARG2 / P78540: Arginase-2, mitochondrial (EC 3.5.3.1) from Homo sapiens P78540: arginase (EC 3.5.3.1) from Homo sapiens	29% id, 39% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

75288-76373 (frame +3) on NC_014323 is similar to:	PaperBLAST
N515DRAFT_0348: Arginase (EC 3.5.3.1) from Dyella japonica Also see hits to annotated proteins above	66% id, 100% cov
Ac3H11_701: Arginase (EC 3.5.3.1) from Acidovorax sp. Also see hits to annotated proteins above	65% id, 88% cov
arcA / P14012: arginase subunit (EC 3.5.3.1) from Agrobacterium fabrum Also see hits to annotated proteins above	41% id, 98% cov
ARGI_NEUCR / P33280: Arginase; EC 3.5.3.1 from Neurospora crassa Also see hits to annotated proteins above	34% id, 93% cov
A0A1S3R1W2: arginase (EC 3.5.3.1) from Salmo salar Also see hits to annotated proteins above	34% id, 90% cov
A0A1P8DAN3: arginase (EC 3.5.3.1) from Oncorhynchus mykiss Also see hits to annotated proteins above	34% id, 90% cov
C0H9C1: arginase (EC 3.5.3.1) from Salmo salar Also see hits to annotated proteins above	34% id, 90% cov
A0A060YSI8: arginase (EC 3.5.3.1) from Oncorhynchus mykiss Also see hits to annotated proteins above	34% id, 90% cov
Q6WVP6: arginase (EC 3.5.3.1) from Schistosoma mansoni Also see hits to annotated proteins above	31% id, 83% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory