Curated BLAST
Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 20 curated entries in PaperBLAST's database that match '3.5.3.11' as complete word(s).
These curated entries have 15 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
HSERO_RS08555: agmatinase is similar to: | PaperBLAST |
A0A146AXJ2: agmatinase (EC 3.5.3.11) from Apostichopus japonicus | 64% id, 88% cov |
W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries | 63% id, 85% cov |
AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens | 62% id, 88% cov |
SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli | 45% id, 92% cov |
SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis | 42% id, 92% cov |
speB / P70999: agmatinase (EC 3.5.3.11) from Bacillus subtilis | 37% id, 91% cov |
Q1K7T0: agmatinase (EC 3.5.3.11) from Neurospora crassa | 37% id, 84% cov |
SPEB_METJA / Q57757: Agmatinase; EC 3.5.3.11 from Methanocaldococcus jannaschii Q57757: agmatinase (EC 3.5.3.11) from Methanocaldococcus jannaschii | 32% id, 96% cov |
D4GWG4: agmatinase (EC 3.5.3.11) from Haloferax volcanii | 33% id, 93% cov |
AGMT_PYRHO / O57839: Agmatinase; EC 3.5.3.11 from Pyrococcus horikoshii | 31% id, 95% cov |
SPEBH_THEKO / Q5JI38: N(1)-aminopropylagmatine ureohydrolase; Agmatinase; Protein SpeB homolog; EC 3.5.3.24; EC 3.5.3.11 from Thermococcus kodakarensis | 31% id, 92% cov |
ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula | 32% id, 84% cov |
ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana | 33% id, 81% cov |
ARGI2_ARATH / Q9ZPF5: Arginase 2, chloroplastic/mitochondrial; Agmatinase ARGAH2; Arginine amidohydrolase 2; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana | 30% id, 80% cov |
Q8YUM9: agmatinase (EC 3.5.3.11) from Anabaena sp. | 30% id, 57% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory