Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 47 curated entries in PaperBLAST's database that match '4.1.1.17'.
These curated entries have 35 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS17280: lysine decarboxylase is similar to: | PaperBLAST |
H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Levilactobacillus brevis | 32% id, 98% cov |
SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli | 32% id, 95% cov |
A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens | 32% id, 95% cov |
| HSERO_RS00950: diaminopimelate decarboxylase is similar to: | PaperBLAST |
AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans | 24% id, 75% cov |
DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus | 25% id, 72% cov |
DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis | 24% id, 73% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory