Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 42 curated entries in PaperBLAST's database that match '4.1.1.17'.

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS17280: lysine decarboxylase
is similar to:
PaperBLAST

H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus brevis

32% id,
98% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

32% id,
95% cov

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

32% id,
95% cov

More...

HSERO_RS00950: diaminopimelate decarboxylase
is similar to:
PaperBLAST

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

24% id,
75% cov

DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus
P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus

25% id,
72% cov

DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis

24% id,
73% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory