Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 23 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS17280: lysine decarboxylase
is similar to:
PaperBLAST

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

48% id,
99% cov

A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

39% id,
96% cov

LDCC_ECOLI / P52095: Constitutive lysine decarboxylase; LDCC; EC 4.1.1.18 from Escherichia coli
LdcC / b0186: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
ldcC / GB|BAA21656.1: lysine decarboxylase, constitutive; EC 4.1.1.18 from Escherichia coli
ldcC / P52095: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
P52095: lysine decarboxylase (EC 4.1.1.18) from Escherichia coli

38% id,
96% cov

More...

HSERO_RS16435: LOG family protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

45% id,
85% cov

HSERO_RS00950: diaminopimelate decarboxylase
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

31% id,
100% cov

HSERO_RS13690: diaminopimelate decarboxylase
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

29% id,
91% cov

HSERO_RS02255: decarboxylase
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

24% id,
94% cov

HSERO_RS12245: 8-amino-7-oxononanoate synthase
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

30% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory