Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 22 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
HSERO_RS17280: lysine decarboxylase is similar to: | PaperBLAST |
LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa | 48% id, 99% cov |
A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes | 39% id, 96% cov |
LDCC_ECOLI / P52095: Constitutive lysine decarboxylase; LDCC; EC 4.1.1.18 from Escherichia coli | 38% id, 96% cov |
HSERO_RS16435: LOG family protein is similar to: | PaperBLAST |
A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba | 45% id, 85% cov |
HSERO_RS00950: diaminopimelate decarboxylase is similar to: | PaperBLAST |
A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca | 31% id, 100% cov |
HSERO_RS13690: diaminopimelate decarboxylase is similar to: | PaperBLAST |
ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium | 29% id, 91% cov |
HSERO_RS02255: decarboxylase is similar to: | PaperBLAST |
A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba | 24% id, 94% cov |
HSERO_RS12245: 8-amino-7-oxononanoate synthase is similar to: | PaperBLAST |
desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor | 30% id, 43% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory