Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 1 curated entries in PaperBLAST's database that match '4.1.1.75'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS08650: acetolactate synthase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa

29% id,
92% cov

HSERO_RS12130: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa

29% id,
92% cov

HSERO_RS05770: benzoylformate decarboxylase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa

28% id,
94% cov

HSERO_RS11350: pyruvate dehydrogenase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa

27% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1963424-1965349 (frame +2) on NC_014323
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
Also see hits to annotated proteins above

29% id,
96% cov

2755561-2757525 (frame +1) on NC_014323
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
Also see hits to annotated proteins above

28% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory