Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 8 curated entries in PaperBLAST's database that match '4.1.1.77' as complete word(s).
These curated entries have 7 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS13395: hydratase is similar to: | PaperBLAST |
AMNE_PSESP / Q9KWS3: 4-oxalocrotonate decarboxylase; EC 4.1.1.77 from Pseudomonas sp. | 28% id, 93% cov |
B0VXM8: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Geobacillus stearothermophilus | 26% id, 97% cov |
praD / C4TP06: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Paenibacillus sp. | 28% id, 84% cov |
| HSERO_RS02100: 4-oxalocrotonate decarboxylase is similar to: | PaperBLAST |
AMNE_PSESP / Q9KWS3: 4-oxalocrotonate decarboxylase; EC 4.1.1.77 from Pseudomonas sp. | 28% id, 90% cov |
| HSERO_RS16775: hydratase is similar to: | PaperBLAST |
praD / C4TP06: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Paenibacillus sp. | 29% id, 85% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3049764-3050642 (frame +3) on NC_014323 is similar to: | PaperBLAST |
cnbF / Q38M37: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Comamonas testosteroni | 31% id, 85% cov |
Lawrence Berkeley National Laboratory