Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 4 curated entries in PaperBLAST's database that match '4.1.2.20' as complete word(s).
These curated entries have 2 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
HSERO_RS01600: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase is similar to: | PaperBLAST |
GARL_ECOLI / P23522: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli | 34% id, 91% cov |
HSERO_RS16395: dihydrodipicolinate synthase is similar to: | PaperBLAST |
P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli | 33% id, 80% cov |
HSERO_RS06870: cytochrome C biogenesis protein CcdA is similar to: | PaperBLAST |
P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli | 27% id, 93% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory