Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 90 curated entries in PaperBLAST's database that match '4.1.2.4'.
These curated entries have 57 distinct sequences.
Running ublast with E ≤ 0.01
Found 12 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS06140: serine hydroxymethyltransferase is similar to: | PaperBLAST |
P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli | 62% id, 100% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 63% id, 95% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 38% id, 92% cov |
| HSERO_RS05120: deoxyribose-phosphate aldolase is similar to: | PaperBLAST |
DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens | 59% id, 98% cov |
Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae | 39% id, 95% cov |
DEOC_ECOLI / P0A6L0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli | 39% id, 93% cov |
| HSERO_RS03355: fructose-bisphosphate aldolase is similar to: | PaperBLAST |
GATY_ECOLI / P0C8J6: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli | 35% id, 100% cov |
GATY_ECOLX / P0C8J7: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli | 34% id, 100% cov |
GATY_KLEOX / Q8VS16: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Klebsiella oxytoca | 33% id, 100% cov |
| HSERO_RS13615: alcohol dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 31% id, 88% cov |
| HSERO_RS06870: cytochrome C biogenesis protein CcdA is similar to: | PaperBLAST |
NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum | 27% id, 88% cov |
| HSERO_RS16395: dihydrodipicolinate synthase is similar to: | PaperBLAST |
NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum | 26% id, 88% cov |
nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida | 23% id, 76% cov |
NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida | 25% id, 60% cov |
| HSERO_RS14040: alcohol dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 29% id, 72% cov |
| HSERO_RS02795: alcohol dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 30% id, 53% cov |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 26% id, 23% cov |
| HSERO_RS22435: zinc-binding dehydrogenase is similar to: | PaperBLAST |
AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum | 27% id, 53% cov |
| HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase is similar to: | PaperBLAST |
nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida | 26% id, 34% cov |
NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida | 33% id, 23% cov |
| HSERO_RS23360: phosphoheptose isomerase is similar to: | PaperBLAST |
hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis | 32% id, 17% cov |
| HSERO_RS02140: thiamine-phosphate synthase is similar to: | PaperBLAST |
hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis | 33% id, 13% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 8 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory