Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 26 curated entries in PaperBLAST's database that match '4.1.2.4' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS05120: deoxyribose-phosphate aldolase
is similar to:
PaperBLAST

DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens
Q9Y315: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Homo sapiens

59% id,
98% cov

Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae

39% id,
95% cov

DEOC_ECOLI / P0A6L0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli
Tlr / b4381: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli
deoC / P0A6L0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli
P0A6L0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli

39% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory