Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 63 curated entries in PaperBLAST's database that match '4.1.2.5'.
These curated entries have 33 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS05525: ketohydroxyglutarate aldolase is similar to: | PaperBLAST |
kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC 4.1.2.55) from Dickeya dadantii | 55% id, 96% cov |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 53% id, 95% cov |
TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16; EC 4.1.2.55) from Thermotoga maritima | 32% id, 93% cov |
| HSERO_RS05155: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase is similar to: | PaperBLAST |
YidU / b4477: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC 4.1.2.55; EC 4.1.2.21) from Escherichia coli | 48% id, 94% cov |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 34% id, 74% cov |
kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC 4.1.2.55) from Dickeya dadantii | 33% id, 65% cov |
| HSERO_RS03355: fructose-bisphosphate aldolase is similar to: | PaperBLAST |
SQIA_ALKUR / A0A2P6MHY1: Sulfofructosephosphate aldolase; SFP aldolase; EC 4.1.2.57 from Alkalicoccus urumqiensis | 31% id, 99% cov |
| HSERO_RS01600: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase is similar to: | PaperBLAST |
HPCH_ECOLX / Q47098: 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; HHED aldolase; 4-hydroxy-2-ketoheptane-1,7-dioate aldolase; HKHD aldolase; EC 4.1.2.52 from Escherichia coli | 32% id, 94% cov |
RHMA_ECOLI / P76469: 2-keto-3-deoxy-L-rhamnonate aldolase; KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase; 2-keto-3-deoxy acid sugar aldolase; EC 4.1.2.53 from Escherichia coli | 33% id, 86% cov |
KDSGA_PSEPU / P0DOV8: 2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase; 2-keto-3,6-dideoxy-6-sulfogluconate aldolase; KDSG aldolase; EC 4.1.2.58 from Pseudomonas putida | 28% id, 95% cov |
| HSERO_RS16395: dihydrodipicolinate synthase is similar to: | PaperBLAST |
YAGE_ECOLI / P75682: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE; KDG aldolase YagE; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; EC 4.1.2.51; EC 4.1.2.28 from Escherichia coli | 33% id, 80% cov |
| HSERO_RS06870: cytochrome C biogenesis protein CcdA is similar to: | PaperBLAST |
YAGE_ECOLI / P75682: Putative 2-dehydro-3-deoxy-D-gluconate aldolase YagE; KDG aldolase YagE; Putative 2-dehydro-3-deoxy-D-pentonate aldolase YagE; EC 4.1.2.51; EC 4.1.2.28 from Escherichia coli | 27% id, 93% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 6 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory