Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 12 curated entries in PaperBLAST's database that match '4.1.3.17' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS10555: ribonuclease
is similar to:
PaperBLAST

RRAAH_THET8 / Q5SIP7: 4-hydroxy-4-methyl-2-oxoglutarate aldolase; HMG aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; Regulator of ribonuclease activity homolog; EC 4.1.3.17; EC 4.1.1.112 from Thermus thermophilus

49% id,
93% cov

HSERO_RS22295: 4-hydroxy-4-methyl-2-oxoglutarate aldolase
is similar to:
PaperBLAST

LIGK_SPHSK / G2IQQ8: 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp.

40% id,
91% cov

HMGA_PSEP1 / A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida
A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida

40% id,
87% cov

pmdF / Q93PS8: HMG aldolase monomer (EC 4.1.3.17) from Comamonas testosteroni

37% id,
89% cov

More...

HSERO_RS22260: diguanylate cyclase
is similar to:
PaperBLAST

HMGA_PSEP1 / A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida
A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida

36% id,
83% cov

GALC_PSEPK / Q88JX9: 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase; CHA aldolase; Gallate degradation protein C; EC 4.1.3.17 from Pseudomonas putida
galC / Q88JX9: subunit of 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida

36% id,
83% cov

LIGK_SPHSK / G2IQQ8: 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp.

34% id,
87% cov

HSERO_RS01600: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
is similar to:
PaperBLAST

TASA_HAPIR / A0A0F7GG11: 4-hydroxy-4-methyl-2-oxoglutarate aldolase tasA; Tetramic acid Sch210971/2 biosynthesis cluster protein A; EC 4.1.3.17 from Hapsidospora irregularis

29% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory