Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 10 curated entries in PaperBLAST's database that match '4.2.1.141' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS19360: fumarylacetoacetate hydrolase is similar to: | PaperBLAST |
HSERO_RS19360: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae | 100% id, 100% cov |
Ga0059261_1895: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Sphingomonas koreensis | 56% id, 99% cov |
xylX / A0A0H3C4T2: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Caulobacter vibrioides | 55% id, 98% cov |
| HSERO_RS06355: ureidoglycolate lyase is similar to: | PaperBLAST |
KDXD_HALVD / D4GP28: Probable 2-keto-3-deoxyxylonate dehydratase; KDXD; EC 4.2.1.141 from Haloferax volcanii | 33% id, 58% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory