Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 62 curated entries in PaperBLAST's database that match '4.2.1.17' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS19405: enoyl-CoA hydratase
is similar to:
PaperBLAST

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

74% id,
100% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

74% id,
100% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

59% id,
100% cov

More...

HSERO_RS12745: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q9I5I4: enoyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas aeruginosa

73% id,
93% cov

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

40% id,
100% cov

FADB_BACSU / P94549: Probable enoyl-CoA hydratase; EC 4.2.1.17 from Bacillus subtilis

39% id,
96% cov

More...

HSERO_RS01260: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q0KEG0: 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

68% id,
100% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

29% id,
74% cov

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

28% id,
67% cov

More...

HSERO_RS20640: enoyl-CoA hydratase
is similar to:
PaperBLAST

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

58% id,
98% cov

H16_A3593 / Q0K5S0: enoyl-CoA hydratase (EC 4.2.1.17) from Cupriavidus necator

49% id,
100% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

36% id,
100% cov

More...

HSERO_RS20665: 2,3-dehydroadipyl-CoA hydratase
is similar to:
PaperBLAST

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

56% id,
100% cov

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

58% id,
94% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

46% id,
100% cov

More...

HSERO_RS01270: enoyl-CoA hydratase
is similar to:
PaperBLAST

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

35% id,
99% cov

BPHYT_RS17335: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Burkholderia phytofirmans

34% id,
94% cov

H281DRAFT_05725: 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) from Paraburkholderia bryophila

34% id,
94% cov

More...

HSERO_RS15435: enoyl-CoA hydratase
is similar to:
PaperBLAST

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

33% id,
97% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

33% id,
95% cov

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

31% id,
97% cov

More...

HSERO_RS18840: enoyl-CoA hydratase
is similar to:
PaperBLAST

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

33% id,
97% cov

DPGD_AMYOR / G4V4T7: Enoyl-CoA-hydratase; EC 4.2.1.17 from Amycolatopsis orientalis

32% id,
97% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

31% id,
95% cov

More...

HSERO_RS20020: enoyl-CoA hydratase
is similar to:
PaperBLAST

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

30% id,
99% cov

Psest_2437: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) from Pseudomonas stutzeri

30% id,
98% cov

paaF / Q845K2: 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas sp.

29% id,
97% cov

More...

HSERO_RS01610: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q9SE41: enoyl-CoA hydratase (EC 4.2.1.17) from Avicennia marina

29% id,
90% cov

PAAF_ECOLI / P76082: 2,3-dehydroadipyl-CoA hydratase; Enoyl-CoA hydratase; EC 4.2.1.17 from Escherichia coli
YdbR / b1393: putative 2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli
P76082: enoyl-CoA hydratase (EC 4.2.1.17) from Escherichia coli

26% id,
96% cov

ECHM_HUMAN / P30084: Enoyl-CoA hydratase, mitochondrial; mECH; mECH1; Enoyl-CoA hydratase 1; ECHS1; Short-chain enoyl-CoA hydratase; SCEH; EC 4.2.1.17; EC 5.3.3.8 from Homo sapiens
ECHS1 / P30084: short-chain enoyl-CoA hydratase monomer (EC 4.2.1.17) from Homo sapiens
P30084: enoyl-CoA hydratase (EC 4.2.1.17) from Homo sapiens

30% id,
63% cov

More...

HSERO_RS04120: hypothetical protein
is similar to:
PaperBLAST

ECH_THET8 / Q5SKU3: Putative enoyl-CoA hydratase; TtECH; EC 4.2.1.17 from Thermus thermophilus

34% id,
57% cov

paaG / MB|P77467: putative enoyl-CoA hydratase PaaG; EC 4.2.1.17 from Escherichia coli

30% id,
59% cov

AFT31_ALTAL / Q96VB3: Enoyl-CoA hydratase AFT3-1; AF-toxin biosynthesis protein 3-1; EC 4.2.1.17 from Alternaria alternata

30% id,
48% cov

More...

HSERO_RS20645: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

FADB_ECOLI / P21177: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Escherichia coli
OldB / b3846: multifunctional enoyl-CoA hydratase, 3-hydroxyacyl-CoA epimerase, Δ3-cis- Δ2-trans-enoyl-CoA isomerase, L-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35; EC 1.1.1.211; EC 4.2.1.17; EC 5.3.3.8; EC 5.1.2.3) from Escherichia coli
fadB / P21177: multifunctional enoyl-CoA hydratase, 3-hydroxyacyl-CoA epimerase, Δ3-cis- Δ2-trans-enoyl-CoA isomerase, L-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35; EC 4.2.1.17; EC 4.2.1.74; EC 5.3.3.8; EC 5.1.2.3) from Escherichia coli

31% id,
53% cov

fadB / Q88L02: FadB (EC 5.3.3.8; EC 1.1.1.35; EC 5.1.2.3; EC 4.2.1.17; EC 1.1.1.36) from Pseudomonas putida

39% id,
42% cov

FADB_PSEFR / P28793: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Pseudomonas fragi

39% id,
39% cov

More...

HSERO_RS22630: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

Sama_0032: Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) from Shewanella amazonensis

25% id,
40% cov

fadB / Q88L02: FadB (EC 5.3.3.8; EC 1.1.1.35; EC 5.1.2.3; EC 4.2.1.17; EC 1.1.1.36) from Pseudomonas putida

26% id,
38% cov

FADB_PSEFR / P28793: Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Pseudomonas fragi

25% id,
38% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2902007-2902804 (frame -1) on NC_014323
is similar to:
PaperBLAST

Q9I5I4: enoyl-CoA hydratase (EC 4.2.1.17) from Pseudomonas aeruginosa
Also see hits to annotated proteins above

71% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory