Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS15800: D-galactarate dehydratase is similar to: | PaperBLAST |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 100% id, 100% cov |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 67% id, 97% cov |
PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae | 66% id, 99% cov |
| HSERO_RS19355: galactarate dehydratase is similar to: | PaperBLAST |
PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae | 38% id, 97% cov |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 39% id, 94% cov |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 36% id, 94% cov |
| HSERO_RS05150: galactonate dehydratase is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 27% id, 83% cov |
| HSERO_RS05235: fuconate dehydratase is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 35% id, 50% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory