Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 12 curated entries in PaperBLAST's database that match '4.2.1.43' as complete word(s).
These curated entries have 11 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS06870: cytochrome C biogenesis protein CcdA is similar to: | PaperBLAST |
HSERO_RS06870: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Herbaspirillum seropedicae | 100% id, 100% cov |
BPHYT_RS22715: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Burkholderia phytofirmans | 80% id, 97% cov |
Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp. | 72% id, 100% cov |
| HSERO_RS19330: FAH family protein is similar to: | PaperBLAST |
Pf6N2E2_611: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens | 60% id, 100% cov |
AO356_24595: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Pseudomonas fluorescens | 60% id, 100% cov |
kdlD / Q9I1Q1: 2-keto-3-deoxy-L-lyxonate dehydratase (EC 4.2.1.43) from Pseudomonas aeruginosa | 59% id, 100% cov |
| HSERO_RS19360: fumarylacetoacetate hydrolase is similar to: | PaperBLAST |
xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii | 30% id, 68% cov |
| HSERO_RS06355: ureidoglycolate lyase is similar to: | PaperBLAST |
xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii | 33% id, 58% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory