Curated BLAST for Genomes


Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 10 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS12135: xylose isomerase
is similar to:

HSERO_RS12135: Myo-inosose-2 dehydratase (EC from Herbaspirillum seropedicae

100% id,
100% cov

BPHYT_RS13920: Myo-inosose-2 dehydratase (EC from Burkholderia phytofirmans

73% id,
100% cov

AO353_21340: Myo-inosose-2 dehydratase (EC from Pseudomonas fluorescens

66% id,
97% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory