Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.80' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS16775: hydratase
is similar to:
PaperBLAST

MHPD_COMTE / Q9S156: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Comamonas testosteroni

31% id,
98% cov

HSERO_RS13395: hydratase
is similar to:
PaperBLAST

MHPD_COMTE / Q9S156: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Comamonas testosteroni

31% id,
95% cov

cmtF / Q51981: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Pseudomonas putida

29% id,
95% cov

cnbE / Q38M38: 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Comamonas testosteroni

29% id,
94% cov

HSERO_RS02100: 4-oxalocrotonate decarboxylase
is similar to:
PaperBLAST

xylJ / P23107: 2-oxopent-4-enoate hydratase subunit (EC 4.2.1.80) from Pseudomonas putida

27% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory