Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 130 curated entries in PaperBLAST's database that match '4.2.1.9'.

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 21 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS11425: aconitate hydratase
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

85% id,
100% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

46% id,
98% cov

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

45% id,
98% cov

More...

HSERO_RS02650: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILVD_RHIJ3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium johnstonii

74% id,
100% cov

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

73% id,
100% cov

ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides

73% id,
100% cov

More...

HSERO_RS14940: aconitate hydratase
is similar to:
PaperBLAST

ACNA_BRADU / P70920: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Bradyrhizobium diazoefficiens

55% id,
100% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

55% id,
99% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

54% id,
100% cov

More...

HSERO_RS21785: arogenate dehydratase
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

54% id,
94% cov

HSERO_RS16705: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

39% id,
97% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

37% id,
96% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

36% id,
94% cov

More...

HSERO_RS05205: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

37% id,
97% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

37% id,
94% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

36% id,
96% cov

More...

HSERO_RS07200: pterin-4-alpha-carbinolamine dehydratase
is similar to:
PaperBLAST

Q48G05: 4a-hydroxytetrahydrobiopterin dehydratase (EC 4.2.1.96) from Pseudomonas syringae

36% id,
92% cov

HSERO_RS19355: galactarate dehydratase
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

35% id,
93% cov

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

39% id,
71% cov

HSERO_RS22480: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

33% id,
96% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

32% id,
93% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

31% id,
95% cov

More...

HSERO_RS05520: phosphogluconate dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

32% id,
95% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

31% id,
98% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

30% id,
97% cov

More...

HSERO_RS15800: D-galactarate dehydratase
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

32% id,
92% cov

HSERO_RS18430: chorismate mutase
is similar to:
PaperBLAST

AROD2_ARATH / Q9SSE7: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic; AtADT2; AtPDT2; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SSE7: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

38% id,
73% cov

AROD2_PETHY / D3U716: Arogenate dehydratase 2; PhADT2; Prephenate dehydratase ADT3; EC 4.2.1.91; EC 4.2.1.51 from Petunia hybrida
D3U716: arogenate dehydratase (EC 4.2.1.91) from Petunia x

35% id,
76% cov

AROD4_ARATH / O22241: Arogenate dehydratase 4, chloroplastic; AtADT4; EC 4.2.1.91 from Arabidopsis thaliana
O22241: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

32% id,
79% cov

More...

HSERO_RS11180: sugar kinase
is similar to:
PaperBLAST

P94368: ADP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.136); ATP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.93) from Bacillus subtilis

30% id,
86% cov

HSERO_RS23020: amino acid ABC transporter
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

26% id,
94% cov

HSERO_RS01185: amino acid ABC transporter
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

31% id,
77% cov

HSERO_RS05150: galactonate dehydratase
is similar to:
PaperBLAST

A3LZU6: L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis

26% id,
76% cov

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

30% id,
64% cov

lra3 / Q1NEI8: L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp.

28% id,
65% cov

More...

HSERO_RS11440: ABC transporter permease
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

25% id,
76% cov

HSERO_RS07520: LacI family transcriptional regulator
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

23% id,
76% cov

HSERO_RS17550: amino acid ABC transporter substrate-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

24% id,
68% cov

HSERO_RS05730: glucarate dehydratase
is similar to:
PaperBLAST

RHMD_ECOLI / P77215: L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli
RhmD / b2247: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
rhmD / P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli
P77215: L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli

25% id,
25% cov

HSERO_RS16505: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

37% id,
9% cov

citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis

40% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4227485-4228633 (frame -1) on NC_014323
is similar to:
PaperBLAST

AROD6_ARATH / Q9SGD6: Arogenate dehydratase/prephenate dehydratase 6, chloroplastic; AtADT6; AtPDT6; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SGD6: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana
Also see hits to annotated proteins above

30% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory