Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 110 curated entries in PaperBLAST's database that match '4.3.1.1'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS01420: serine/threonine dehydratase
is similar to:		 PaperBLAST

LTHAD_PSESP / A4F2N8: L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; L-THA DH; EC 4.3.1.16 from Pseudomonas sp.
thadh / A4F2N8: L-threo-3-hydroxy aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.
A4F2N8: threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.

 70% id,
99% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

 66% id,
100% cov

LTHAD_YEAST / P36007: L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; EC 4.3.1.16 from Saccharomyces cerevisiae

 67% id,
97% cov

More...

HSERO_RS00300: ornithine cyclodeaminase
is similar to:		 PaperBLAST

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

 65% id,
89% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

 55% id,
95% cov

arcB / J7SH14: ornithine cyclodeaminase subunit (EC 4.3.1.12) from Clostridium sporogenes

 53% id,
98% cov

More...

HSERO_RS19510: threonine dehydratase
is similar to:		 PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

 51% id,
97% cov

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

 55% id,
82% cov

V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum

 51% id,
87% cov

More...

HSERO_RS00265: threonine dehydratase
is similar to:		 PaperBLAST

CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus

 51% id,
98% cov

Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis

 51% id,
94% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

 44% id,
99% cov

More...

HSERO_RS07610: fumarate hydratase
is similar to:		 PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

 43% id,
98% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

 42% id,
97% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

 39% id,
99% cov

More...

HSERO_RS16005: 1-aminocyclopropane-1-carboxylate deaminase
is similar to:		 PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

 36% id,
94% cov

HSERO_RS09030: hypothetical protein
is similar to:		 PaperBLAST

L0N5C4: threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.

 33% id,
99% cov

LTHAD_PSESP / A4F2N8: L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; L-THA DH; EC 4.3.1.16 from Pseudomonas sp.
thadh / A4F2N8: L-threo-3-hydroxy aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.
A4F2N8: threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.

 30% id,
99% cov

LTHAD_YEAST / P36007: L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; EC 4.3.1.16 from Saccharomyces cerevisiae

 30% id,
97% cov

More...

HSERO_RS05720: alanine racemase
is similar to:		 PaperBLAST

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; EC 4.3.1.18 from Gallus gallus

 33% id,
98% cov

DSD1_YEAST / P53095: D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Saccharomyces cerevisiae
P53095: D-Serine ammonia-lyase (EC 4.3.1.18) from Saccharomyces cerevisiae

 27% id,
97% cov

HSERO_RS22840: ornithine cyclodeaminase
is similar to:		 PaperBLAST

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

 31% id,
61% cov

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

 28% id,
64% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

 28% id,
61% cov

HSERO_RS16475: tryptophan synthase subunit alpha
is similar to:		 PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

 25% id,
68% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

 25% id,
47% cov

HSERO_RS14685: argininosuccinate lyase
is similar to:		 PaperBLAST

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

 23% id,
67% cov

HSERO_RS04915: cysteine synthase
is similar to:		 PaperBLAST

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

 28% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory