Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 82 curated entries in PaperBLAST's database that match '4.3.1.2'.

These curated entries have 69 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS05720: alanine racemase is similar to:	PaperBLAST
DTHAD_DELSH / B2DFG5: D-threo-3-hydroxyaspartate dehydratase; D-THA DH; D-THA dehydratase; Threo-3-hydroxy-D-aspartate ammonia-lyase; EC 4.3.1.27 from Delftia sp. dthadh / B2DFG5: D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.27) from Delftia sp. B2DFG5: threo-3-hydroxy-D-aspartate ammonia-lyase (EC 4.3.1.27) from Delftia sp.	69% id, 99% cov

HSERO_RS22680: histidine ammonia-lyase is similar to:	PaperBLAST
TALY_CUPMC / Q1LRV9: Tyrosine ammonia-lyase; CmTAL; Tyrosine 2,3-aminomutase; EC 4.3.1.23; EC 5.4.3.6 from Cupriavidus metallidurans	37% id, 98% cov
TAM_STRGL / Q8GMG0: MIO-dependent tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Streptomyces globisporus	36% id, 96% cov
TAM_CHOCO / Q0VZ68: Tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Chondromyces crocatus	35% id, 97% cov
encP / Q9KHJ9: phenylalanine ammonia lyase (EC 4.3.1.25) from Streptomyces maritimus	33% id, 99% cov
Q54JI7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Dictyostelium discoideum	33% id, 100% cov
TALY_CERS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Cereibacter sphaeroides Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Cereibacter sphaeroides	32% id, 95% cov
TAM_MYXFU / B8ZV93: Tyrosine 2,3-aminomutase; MfTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus fulvus	35% id, 86% cov
TAM_MYXSM / B8ZV94: Tyrosine 2,3-aminomutase; MxTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus sp.	35% id, 86% cov
PAL_TRIV2 / Q3M5Z3: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Trichormus variabilis Q3M5Z3: phenylalanine ammonia-lyase (EC 4.3.1.24) from Trichormus variabilis	30% id, 94% cov
PAL_NOSP7 / B2J528: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nostoc punctiforme	33% id, 83% cov
F0SIS6: phenylalanine ammonia-lyase (EC 4.3.1.24) from Rubinisphaera brasiliensis	27% id, 97% cov
HKM12_ASPHA / P0DUM0: Phenylalanine ammonia-lyase hkm12; PAL; Hancockiamides biosynthesis cluster protein 12; EC 4.3.1.24 from Aspergillus hancockii	31% id, 71% cov
PALY1_PLEOS / A0A4Y6HUI7: Phenylalanine ammonia-lyase 1; PoPAL1; EC 4.3.1.24 from Pleurotus ostreatus	30% id, 72% cov
Q68G83: phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine aminomutase (L-beta-phenylalanine forming) (EC 5.4.3.10) from Taxus chinensis	30% id, 70% cov
PAM_TAXCH / Q68G84: Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus chinensis	30% id, 70% cov
PAL1_NARPS / A0A2H5AIW0: Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Narcissus pseudonarcissus	29% id, 72% cov
PAM_TAXCA / Q6GZ04: Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus canadensis	30% id, 69% cov
PALY_MAIZE / Q8VXG7: Phenylalanine/tyrosine ammonia-lyase; Bifunctional phenylalanine ammonia-lyase; Bifunctional PAL; EC 4.3.1.25 from Zea mays Q8VXG7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Zea mays	28% id, 74% cov
C5YCD6: phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Sorghum bicolor	29% id, 71% cov
PAL3_ARATH / P45725: Phenylalanine ammonia-lyase 3; EC 4.3.1.24 from Arabidopsis thaliana	29% id, 70% cov
D5KS97: phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Bambusa oldhamii	29% id, 70% cov
PAL2_NARPS / A0A2H5AIY6: Phenylalanine ammonia-lyase 2; EC 4.3.1.24 from Narcissus pseudonarcissus	28% id, 73% cov
C5XXT9: phenylalanine ammonia-lyase (EC 4.3.1.24) from Sorghum bicolor	28% id, 72% cov
STR11_STRTC / A0A384XHA3: Phenylalanine ammonia-lyase str11; PAL; Strobilurin biosynthesis cluster protein r11; EC 4.3.1.24 from Strobilurus tenacellus	29% id, 71% cov
PALY_TRIMT / X2BTY5: Phenylalanine ammonia-lyase; TmPAL; EC 4.3.1.24 from Tricholoma matsutake	29% id, 69% cov
PAL2_ARATH / P45724: Phenylalanine ammonia-lyase 2; EC 4.3.1.24 from Arabidopsis thaliana	28% id, 71% cov
C5XXT8: phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Sorghum bicolor	29% id, 70% cov
Q852S1: phenylalanine ammonia-lyase (EC 4.3.1.24) from Daucus carota	28% id, 72% cov
L0BXX7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Plectranthus scutellarioides	28% id, 72% cov
E3T9X0: phenylalanine ammonia-lyase (EC 4.3.1.24) from Allium sativum	28% id, 71% cov
A9XIW5: phenylalanine ammonia-lyase (EC 4.3.1.24) from Salvia miltiorrhiza	28% id, 72% cov
PAL4_ARATH / Q9SS45: Phenylalanine ammonia-lyase 4; EC 4.3.1.24 from Arabidopsis thaliana	28% id, 69% cov
B9VU66: phenylalanine ammonia-lyase (EC 4.3.1.24) from Lycoris radiata	29% id, 69% cov
Q52QH3: phenylalanine ammonia-lyase (EC 4.3.1.24) from Astragalus mongholicus	28% id, 71% cov
D0E576: phenylalanine ammonia-lyase (EC 4.3.1.24) from Avena sativa	28% id, 70% cov
PAL1_PETCR / P24481: Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Petroselinum crispum	27% id, 71% cov
PALY_FLAVE / A0A0A7AAW9: Phenylalanine ammonia-lyase; FvPAL; EC 4.3.1.24 from Flammulina velutipes	28% id, 69% cov
P35511: phenylalanine ammonia-lyase (EC 4.3.1.24) from Solanum lycopersicum	28% id, 70% cov
Q5EIB6: phenylalanine ammonia-lyase (EC 4.3.1.24) from Rhodiola sachalinensis	29% id, 66% cov
Q0GA81: phenylalanine ammonia-lyase (EC 4.3.1.24) from Jatropha curcas	28% id, 69% cov
P45733: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	28% id, 69% cov
PAL1_ARATH / P35510: Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Arabidopsis thaliana	27% id, 71% cov
PAL1_TOBAC / P25872: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nicotiana tabacum P25872: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	28% id, 69% cov
C0LL35: phenylalanine ammonia-lyase (EC 4.3.1.24) from Bambusa oldhamii	29% id, 66% cov
C6ZIA5: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	28% id, 69% cov
P35513: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	27% id, 69% cov
PAL1 / B5U983: phenylalanine ammonia-lyase 1 (EC 4.3.1.25) from Ephedra sinica B5U983: phenylalanine ammonia-lyase (EC 4.3.1.24) from Ephedra sinica	28% id, 69% cov
Q6ST23: phenylalanine ammonia-lyase (EC 4.3.1.24) from Bambusa oldhamii	29% id, 66% cov
B1GS31: phenylalanine ammonia-lyase (EC 4.3.1.24) from Cynara cardunculus	29% id, 65% cov
D3Y5L6: phenylalanine ammonia-lyase (EC 4.3.1.24) from Cistanche deserticola	28% id, 67% cov
PALY2_PLEOS / A0A4Y6HUD7: Phenylalanine ammonia-lyase 2; PoPAL2; EC 4.3.1.24 from Pleurotus ostreatus	28% id, 67% cov
F8RL28: phenylalanine ammonia-lyase (EC 4.3.1.24) from Fragaria x	27% id, 70% cov
C0HJ40: phenylalanine ammonia-lyase (EC 4.3.1.24) from Zea mays	29% id, 66% cov
U5TV35: tyrosine ammonia-lyase (EC 4.3.1.23) from Rhodotorula glutinis	32% id, 58% cov
Q672H7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Camellia sinensis	26% id, 72% cov
PAL1_PETHY / Q50EX7: Phenylalanine ammonia-lyase 1; PhPAL1; EC 4.3.1.24 from Petunia hybrida	28% id, 66% cov
P52777: phenylalanine ammonia-lyase (EC 4.3.1.24) from Pinus taeda	28% id, 66% cov
PALY_RHOTO / P11544: Phenylalanine/tyrosine ammonia-lyase; Bifunctional phenylalanine ammonia-lyase; Bifunctional PAL; EC 4.3.1.25 from Rhodotorula toruloides P11544: phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Rhodotorula toruloides	32% id, 56% cov
CLZ10_COCLU / A0A345BJN1: Phenylalanine ammonia-lyase; PAL; Squalestatin S1 biosynthesis cluster protein clz10; Zaragozic acid A biosynthesis cluster protein 10; EC 4.3.1.24 from Cochliobolus lunatus	29% id, 60% cov
MFM7_PHOSM / A0A3G1DJK5: Phenylalanine ammonia-lyase; PAL; Squalestatin S1 biosynthesis cluster protein M7; EC 4.3.1.24 from Phoma sp.	28% id, 60% cov
More...

HSERO_RS18505: histidine ammonia-lyase is similar to:	PaperBLAST
TAM_STRGL / Q8GMG0: MIO-dependent tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Streptomyces globisporus	35% id, 95% cov
TALY_CERS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Cereibacter sphaeroides Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Cereibacter sphaeroides	35% id, 94% cov
TAM_CHOCO / Q0VZ68: Tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Chondromyces crocatus	32% id, 94% cov
Q54JI7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Dictyostelium discoideum	31% id, 97% cov
encP / Q9KHJ9: phenylalanine ammonia lyase (EC 4.3.1.25) from Streptomyces maritimus	34% id, 88% cov
TAM_MYXFU / B8ZV93: Tyrosine 2,3-aminomutase; MfTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus fulvus	37% id, 80% cov
TAM_MYXSM / B8ZV94: Tyrosine 2,3-aminomutase; MxTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus sp.	37% id, 80% cov
F0SIS6: phenylalanine ammonia-lyase (EC 4.3.1.24) from Rubinisphaera brasiliensis	31% id, 95% cov
PAL_TRIV2 / Q3M5Z3: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Trichormus variabilis Q3M5Z3: phenylalanine ammonia-lyase (EC 4.3.1.24) from Trichormus variabilis	33% id, 83% cov
PAL_NOSP7 / B2J528: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nostoc punctiforme	32% id, 84% cov
D0E576: phenylalanine ammonia-lyase (EC 4.3.1.24) from Avena sativa	31% id, 76% cov
PALY_MAIZE / Q8VXG7: Phenylalanine/tyrosine ammonia-lyase; Bifunctional phenylalanine ammonia-lyase; Bifunctional PAL; EC 4.3.1.25 from Zea mays Q8VXG7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Zea mays	31% id, 76% cov
Q68G83: phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine aminomutase (L-beta-phenylalanine forming) (EC 5.4.3.10) from Taxus chinensis	34% id, 69% cov
PAM_TAXCH / Q68G84: Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus chinensis	34% id, 69% cov
C5XXT8: phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Sorghum bicolor	31% id, 76% cov
PAM_TAXCA / Q6GZ04: Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus canadensis	34% id, 68% cov
D5KS97: phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Bambusa oldhamii	32% id, 74% cov
E3T9X0: phenylalanine ammonia-lyase (EC 4.3.1.24) from Allium sativum	31% id, 73% cov
PAL4_ARATH / Q9SS45: Phenylalanine ammonia-lyase 4; EC 4.3.1.24 from Arabidopsis thaliana	33% id, 67% cov
PAL2_NARPS / A0A2H5AIY6: Phenylalanine ammonia-lyase 2; EC 4.3.1.24 from Narcissus pseudonarcissus	32% id, 71% cov
PAL1 / B5U983: phenylalanine ammonia-lyase 1 (EC 4.3.1.25) from Ephedra sinica B5U983: phenylalanine ammonia-lyase (EC 4.3.1.24) from Ephedra sinica	33% id, 67% cov
P52777: phenylalanine ammonia-lyase (EC 4.3.1.24) from Pinus taeda	33% id, 68% cov
HKM12_ASPHA / P0DUM0: Phenylalanine ammonia-lyase hkm12; PAL; Hancockiamides biosynthesis cluster protein 12; EC 4.3.1.24 from Aspergillus hancockii	32% id, 69% cov
C0HJ40: phenylalanine ammonia-lyase (EC 4.3.1.24) from Zea mays	34% id, 67% cov
C0LL35: phenylalanine ammonia-lyase (EC 4.3.1.24) from Bambusa oldhamii	33% id, 67% cov
L0BXX7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Plectranthus scutellarioides	33% id, 67% cov
D3Y5L6: phenylalanine ammonia-lyase (EC 4.3.1.24) from Cistanche deserticola	33% id, 67% cov
PAL1_NARPS / A0A2H5AIW0: Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Narcissus pseudonarcissus	33% id, 68% cov
PAL1_PETHY / Q50EX7: Phenylalanine ammonia-lyase 1; PhPAL1; EC 4.3.1.24 from Petunia hybrida	31% id, 72% cov
PAL3_ARATH / P45725: Phenylalanine ammonia-lyase 3; EC 4.3.1.24 from Arabidopsis thaliana	32% id, 68% cov
Q852S1: phenylalanine ammonia-lyase (EC 4.3.1.24) from Daucus carota	33% id, 67% cov
A9XIW5: phenylalanine ammonia-lyase (EC 4.3.1.24) from Salvia miltiorrhiza	33% id, 67% cov
U5TV35: tyrosine ammonia-lyase (EC 4.3.1.23) from Rhodotorula glutinis	31% id, 71% cov
C5YCD6: phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Sorghum bicolor	31% id, 69% cov
Q672H7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Camellia sinensis	32% id, 67% cov
Q6ST23: phenylalanine ammonia-lyase (EC 4.3.1.24) from Bambusa oldhamii	33% id, 67% cov
C5XXT9: phenylalanine ammonia-lyase (EC 4.3.1.24) from Sorghum bicolor	33% id, 66% cov
PALY_TRIMT / X2BTY5: Phenylalanine ammonia-lyase; TmPAL; EC 4.3.1.24 from Tricholoma matsutake	31% id, 70% cov
B1GS31: phenylalanine ammonia-lyase (EC 4.3.1.24) from Cynara cardunculus	32% id, 68% cov
PAL1_FRIUN / P0DO55: Phenylalanine/tyrosine ammonia-lyase 1; FuPAL1; EC 4.3.1.25 from Fritillaria unibracteata	33% id, 66% cov
Q0GA81: phenylalanine ammonia-lyase (EC 4.3.1.24) from Jatropha curcas	32% id, 67% cov
Q52QH3: phenylalanine ammonia-lyase (EC 4.3.1.24) from Astragalus mongholicus	32% id, 67% cov
PALY1_PLEOS / A0A4Y6HUI7: Phenylalanine ammonia-lyase 1; PoPAL1; EC 4.3.1.24 from Pleurotus ostreatus	31% id, 68% cov
PAL2_ARATH / P45724: Phenylalanine ammonia-lyase 2; EC 4.3.1.24 from Arabidopsis thaliana	31% id, 68% cov
STR11_STRTC / A0A384XHA3: Phenylalanine ammonia-lyase str11; PAL; Strobilurin biosynthesis cluster protein r11; EC 4.3.1.24 from Strobilurus tenacellus	30% id, 71% cov
PAL1_TOBAC / P25872: Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nicotiana tabacum P25872: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	31% id, 69% cov
PAL1_PETCR / P24481: Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Petroselinum crispum	32% id, 67% cov
F8RL28: phenylalanine ammonia-lyase (EC 4.3.1.24) from Fragaria x	32% id, 66% cov
MFM7_PHOSM / A0A3G1DJK5: Phenylalanine ammonia-lyase; PAL; Squalestatin S1 biosynthesis cluster protein M7; EC 4.3.1.24 from Phoma sp.	28% id, 75% cov
Q5EIB6: phenylalanine ammonia-lyase (EC 4.3.1.24) from Rhodiola sachalinensis	32% id, 67% cov
PALY_FLAVE / A0A0A7AAW9: Phenylalanine ammonia-lyase; FvPAL; EC 4.3.1.24 from Flammulina velutipes	29% id, 73% cov
P35513: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	31% id, 67% cov
P45733: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	31% id, 67% cov
PALY_RHOTO / P11544: Phenylalanine/tyrosine ammonia-lyase; Bifunctional phenylalanine ammonia-lyase; Bifunctional PAL; EC 4.3.1.25 from Rhodotorula toruloides P11544: phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Rhodotorula toruloides	31% id, 68% cov
C6ZIA5: phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum	31% id, 69% cov
CLZ10_COCLU / A0A345BJN1: Phenylalanine ammonia-lyase; PAL; Squalestatin S1 biosynthesis cluster protein clz10; Zaragozic acid A biosynthesis cluster protein 10; EC 4.3.1.24 from Cochliobolus lunatus	28% id, 76% cov
PAL1_ARATH / P35510: Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Arabidopsis thaliana	31% id, 67% cov
B9VU66: phenylalanine ammonia-lyase (EC 4.3.1.24) from Lycoris radiata	31% id, 68% cov
P35511: phenylalanine ammonia-lyase (EC 4.3.1.24) from Solanum lycopersicum	30% id, 68% cov
PALY2_PLEOS / A0A4Y6HUD7: Phenylalanine ammonia-lyase 2; PoPAL2; EC 4.3.1.24 from Pleurotus ostreatus	27% id, 73% cov
TALY_CUPMC / Q1LRV9: Tyrosine ammonia-lyase; CmTAL; Tyrosine 2,3-aminomutase; EC 4.3.1.23; EC 5.4.3.6 from Cupriavidus metallidurans	38% id, 49% cov
More...

HSERO_RS00300: ornithine cyclodeaminase is similar to:	PaperBLAST
fkbL / Q9KIE2: L-lysine cyclodeaminase (EC 4.3.1.28) from Streptomyces hygroscopicus	31% id, 99% cov
RAPL_STRRN / Q54304: L-lysine cyclodeaminase; Rapamycin biosynthesis protein L; EC 4.3.1.28 from Streptomyces rapamycinicus rapL / Q54304: L-lysine cyclodeaminase (EC 4.3.1.28) from Streptomyces rapamycinicus	29% id, 92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory