Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS22680: histidine ammonia-lyase is similar to:	PaperBLAST
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	36% id, 99% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	36% id, 99% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	37% id, 98% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	35% id, 99% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	35% id, 99% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	36% id, 97% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	37% id, 94% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	35% id, 97% cov
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	34% id, 98% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	33% id, 100% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	34% id, 97% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	36% id, 89% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	32% id, 97% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	35% id, 86% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	37% id, 75% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	35% id, 77% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	35% id, 76% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	35% id, 77% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	35% id, 76% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	34% id, 74% cov
More...

HSERO_RS18505: histidine ammonia-lyase is similar to:	PaperBLAST
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	36% id, 94% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	33% id, 98% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	35% id, 93% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	34% id, 94% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	32% id, 99% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	33% id, 95% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	33% id, 95% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	31% id, 97% cov
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	31% id, 96% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	31% id, 95% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	33% id, 90% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	32% id, 89% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	29% id, 96% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	31% id, 89% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	34% id, 76% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	34% id, 76% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	35% id, 73% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	33% id, 76% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	32% id, 77% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	32% id, 76% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory