Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 8 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS10740: alanine racemase
is similar to:
PaperBLAST

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

27% id,
97% cov

HSERO_RS19760: alanine racemase
is similar to:
PaperBLAST

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

24% id,
90% cov

alr / Q88GJ9: amino acid racemase (EC 5.1.1.10; EC 5.1.1.24; EC 5.1.1.18; EC 5.1.1.2; EC 5.1.1.9; EC 5.1.1.5; EC 5.1.1.1) from Pseudomonas putida

26% id,
77% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

25% id,
77% cov

HSERO_RS19210: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

38% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory