Curated BLAST for Genomes


Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS05110: RbsD or FucU transport protein
is similar to:

FUCM_HUMAN / A2VDF0: Fucose mutarotase; EC from Homo sapiens
A2VDF0: L-fucose mutarotase (EC from Homo sapiens

46% id,
94% cov

FUCM_MOUSE / Q8R2K1: Fucose mutarotase; EC from Mus musculus
Q8R2K1: L-fucose mutarotase (EC; D-ribose pyranase (EC from Mus musculus

41% id,
95% cov

FUCM_ECOLI / P0AEN8: L-fucose mutarotase; D-ribose pyranase; Fucose 1-epimerase; Type-2 mutarotase; EC; EC from Escherichia coli
FucU / b2804: L-fucose mutarotase (EC; EC from Escherichia coli
fucU / P0AEN8: L-fucose mutarotase (EC; EC from Escherichia coli
P0AEN8: L-fucose mutarotase (EC; D-ribose pyranase (EC from Escherichia coli

37% id,
100% cov

HSERO_RS05245: hypothetical protein
is similar to:

FUCM_XANCP / Q8P3K1: L-fucose mutarotase; Fucose 1-epimerase; Type-2 mutarotase; EC from Xanthomonas campestris

46% id,
89% cov

BT1276: L-fucose mutarotase FucU (EC from Bacteroides thetaiotaomicron

44% id,
84% cov

HSERO_RS22205: L-rhamnose mutarotase
is similar to:

SM_b21108: L-fucose mutarotase (EC from Sinorhizobium meliloti

28% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory