Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 15 curated entries in PaperBLAST's database that match '5.1.3.4' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS21150: aldolase
is similar to:
PaperBLAST

ULAF_ECOLI / P39306: L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YjfX / b4198: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli
ulaF / P39306: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli

23% id,
86% cov

HSERO_RS06795: ribulose-5-phosphate 4-epimerase
is similar to:
PaperBLAST

C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum

27% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory