Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 23 curated entries in PaperBLAST's database that match '5.3.1.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS22240: sugar isomerase
is similar to:
PaperBLAST

P26997: xylose isomerase (EC 5.3.1.5) from Thermus thermophilus

26% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory