Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS06540: muconate cycloisomerase is similar to: | PaperBLAST |
Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens | 61% id, 97% cov |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 60% id, 98% cov |
catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei | 60% id, 99% cov |
| HSERO_RS18290: muconate cycloisomerase is similar to: | PaperBLAST |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 58% id, 100% cov |
catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei | 58% id, 99% cov |
Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens | 57% id, 99% cov |
| HSERO_RS05730: glucarate dehydratase is similar to: | PaperBLAST |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 27% id, 89% cov |
Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens | 26% id, 87% cov |
CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida | 24% id, 89% cov |
| HSERO_RS05150: galactonate dehydratase is similar to: | PaperBLAST |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 26% id, 88% cov |
catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei | 26% id, 86% cov |
CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida | 25% id, 90% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory