Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 7 curated entries in PaperBLAST's database that match '6.2.1.27' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS00095: AMP-dependent synthetase
is similar to:
PaperBLAST

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

31% id,
95% cov

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

26% id,
96% cov

4CLL6_ARATH / Q84P24: 4-coumarate--CoA ligase-like 6; 4-coumarate--CoA ligase; 4-coumarate--CoA ligase isoform 7; At4CL7; 4-hydroxybenzoate--CoA ligase; EC 6.2.1.-; EC 6.2.1.12; EC 6.2.1.27 from Arabidopsis thaliana

27% id,
88% cov

HSERO_RS13695: acyl-CoA ligase
is similar to:
PaperBLAST

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

29% id,
96% cov

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

29% id,
96% cov

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

25% id,
89% cov

More...

HSERO_RS04625: AMP-binding protein
is similar to:
PaperBLAST

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

30% id,
94% cov

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

27% id,
99% cov

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

29% id,
28% cov

HSERO_RS11735: hypothetical protein
is similar to:
PaperBLAST

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

29% id,
93% cov

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

26% id,
98% cov

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

27% id,
96% cov

More...

HSERO_RS07975: AMP-binding protein
is similar to:
PaperBLAST

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

27% id,
98% cov

4CLL6_ARATH / Q84P24: 4-coumarate--CoA ligase-like 6; 4-coumarate--CoA ligase; 4-coumarate--CoA ligase isoform 7; At4CL7; 4-hydroxybenzoate--CoA ligase; EC 6.2.1.-; EC 6.2.1.12; EC 6.2.1.27 from Arabidopsis thaliana

23% id,
86% cov

HSERO_RS19285: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

28% id,
94% cov

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

28% id,
94% cov

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

31% id,
72% cov

More...

HSERO_RS23535: acyl-CoA synthetase
is similar to:
PaperBLAST

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

27% id,
97% cov

HSERO_RS07770: acetyl-CoA synthetase
is similar to:
PaperBLAST

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

26% id,
98% cov

HSERO_RS19075: acyl-CoA synthetase
is similar to:
PaperBLAST

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

26% id,
96% cov

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

27% id,
89% cov

4CLL6_ARATH / Q84P24: 4-coumarate--CoA ligase-like 6; 4-coumarate--CoA ligase; 4-coumarate--CoA ligase isoform 7; At4CL7; 4-hydroxybenzoate--CoA ligase; EC 6.2.1.-; EC 6.2.1.12; EC 6.2.1.27 from Arabidopsis thaliana

27% id,
67% cov

HSERO_RS15645: acetyl-CoA synthetase
is similar to:
PaperBLAST

4CLL6_ARATH / Q84P24: 4-coumarate--CoA ligase-like 6; 4-coumarate--CoA ligase; 4-coumarate--CoA ligase isoform 7; At4CL7; 4-hydroxybenzoate--CoA ligase; EC 6.2.1.-; EC 6.2.1.12; EC 6.2.1.27 from Arabidopsis thaliana

24% id,
64% cov

HSERO_RS11905: acyltransferase
is similar to:
PaperBLAST

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

28% id,
53% cov

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

25% id,
46% cov

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

26% id,
40% cov

More...

HSERO_RS12835: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

4HBCL_RHOPA / Q53005: 4-hydroxybenzoate--CoA/benzoate--CoA ligase; 4-hydroxybenzoyl-CoA synthetase; EC 6.2.1.25; EC 6.2.1.27 from Rhodopseudomonas palustris
hbaA / Q53005: 4-hydroxybenzoate-CoA ligase subunit (EC 6.2.1.25; EC 6.2.1.27) from Rhodopseudomonas palustris

27% id,
46% cov

Q5P0J2: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Azoarcus sp.

23% id,
49% cov

3HBCL_THAAR / Q9AJS8: 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase; 3-hydroxybenzoyl-CoA synthetase; EC 6.2.1.27; EC 6.2.1.37 from Thauera aromatica
hcl / Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27) from Thauera aromatica
Q9AJS8: 4-hydroxybenzoate-CoA ligase (EC 6.2.1.27); 3-hydroxybenzoate-CoA ligase (EC 6.2.1.37) from Thauera aromatica

23% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory