Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 2 curated entries in PaperBLAST's database that match 'L-2,4-diketo-3-deoxyrhamnonate hydrolase' as complete word(s).
These curated entries have 2 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS06355: ureidoglycolate lyase is similar to: | PaperBLAST |
SM_b21112: L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase from Sinorhizobium meliloti | 63% id, 99% cov |
8gsrA / Q1NEI7: Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) | 55% id, 94% cov |
| HSERO_RS17860: 5-carboxymethyl-2-hydroxymuconate isomerase is similar to: | PaperBLAST |
SM_b21112: L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase from Sinorhizobium meliloti | 34% id, 77% cov |
8gsrA / Q1NEI7: Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) | 37% id, 66% cov |
| HSERO_RS05065: 2-keto-4-pentenoate hydratase is similar to: | PaperBLAST |
8gsrA / Q1NEI7: Crystal structure of l-2,4-diketo-3-deoxyrhamnonate hydrolase from sphingomonas sp. (Apo-form) | 30% id, 53% cov |
SM_b21112: L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase from Sinorhizobium meliloti | 26% id, 59% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory