Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 1 curated entries in PaperBLAST's database that match 'N-acetyl-LL-diaminopimelate aminotransferase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS17885: aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

35% id,
95% cov

HSERO_RS15115: aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

31% id,
90% cov

HSERO_RS10455: aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

29% id,
95% cov

HSERO_RS10805: succinyldiaminopimelate aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

27% id,
89% cov

HSERO_RS12800: aspartate aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

27% id,
88% cov

HSERO_RS09050: 2-aminoadipate aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

24% id,
97% cov

HSERO_RS09025: GntR family transcriptional regulator
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

25% id,
84% cov

HSERO_RS15220: GntR family transcriptional regulator
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

22% id,
87% cov

HSERO_RS23235: GntR family transcriptional regulator
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

24% id,
54% cov

HSERO_RS20990: aminotransferase DegT
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

26% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory