Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 3 curated entries in PaperBLAST's database that match 'N-succinylglutamylphosphate reductase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS19210: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

CA265_RS18540: N-succinylglutamylphosphate reductase (EC 1.2.1.38) from Pedobacter sp.

35% id,
98% cov

BT3759: N-succinylglutamylphosphate reductase (EC 1.2.1.-) from Bacteroides thetaiotaomicron

33% id,
99% cov

Echvi_3847: N-succinylglutamylphosphate reductase (EC 1.2.1.-) from Echinicola vietnamensis

32% id,
97% cov

HSERO_RS14025: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

Echvi_3847: N-succinylglutamylphosphate reductase (EC 1.2.1.-) from Echinicola vietnamensis

31% id,
74% cov

CA265_RS18540: N-succinylglutamylphosphate reductase (EC 1.2.1.38) from Pedobacter sp.

28% id,
75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory