Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum seropedicae SmR1 (HerbieS)

Found 28 curated entries in PaperBLAST's database that match 'cystathionine gamma-lyase' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query

HSERO_RS04915: cysteine synthase
is similar to:		 PaperBLAST

CGL_ARATH / F4K5T2: Bifunctional cystathionine gamma-lyase/cysteine synthase; Beta-substituted Ala synthase 4;3; ARAth-Bsas4;3; L-cysteine desulfhydrase 1; DES1; O-acetylserine (thiol)-lyase; OASTL; Protein CS-LIKE; EC 2.5.1.47; EC 4.4.1.1 from Arabidopsis thaliana

 41% id,
93% cov

HSERO_RS16440: hypothetical protein
is similar to:		 PaperBLAST

7ba4A / A0A509J8D5: Structure of cystathionine gamma-lyase from pseudomonas aeruginosa

 37% id,
98% cov

7d7oB / Q818A3: Crystal structure of cystathionine gamma-lyase from bacillus cereus atcc 14579

 33% id,
99% cov

CGL_DICDI / Q55DV9: Cystathionine gamma-lyase; CGL; CSE; Cysteine desulfhydrase; Cysteine-protein sulfhydrase; Gamma-cystathionase; Homocysteine desulfhydrase; EC 4.4.1.1; EC 4.4.1.2 from Dictyostelium discoideum

 33% id,
99% cov

More...

HSERO_RS14995: cystathionine beta-lyase
is similar to:		 PaperBLAST

MCCB_BACSU / O05394: Cystathionine gamma-lyase; Gamma-cystathionase; Homocysteine gamma-lyase; EC 4.4.1.1; EC 4.4.1.2 from Bacillus subtilis

 32% id,
100% cov

7ba4A / A0A509J8D5: Structure of cystathionine gamma-lyase from pseudomonas aeruginosa

 31% id,
98% cov

7d7oB / Q818A3: Crystal structure of cystathionine gamma-lyase from bacillus cereus atcc 14579

 30% id,
100% cov

More...

HSERO_RS18310: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:		 PaperBLAST

E9AFE7: cystathionine gamma-lyase (EC 4.4.1.1) from Leishmania major

 32% id,
95% cov

Q4WCI1: cystathionine gamma-lyase (EC 4.4.1.1) from Aspergillus fumigatus

 35% id,
72% cov

MCCB_BACSU / O05394: Cystathionine gamma-lyase; Gamma-cystathionase; Homocysteine gamma-lyase; EC 4.4.1.1; EC 4.4.1.2 from Bacillus subtilis

 43% id,
56% cov

More...

HSERO_RS14180: cysteine desulfurase
is similar to:		 PaperBLAST

7ba4A / A0A509J8D5: Structure of cystathionine gamma-lyase from pseudomonas aeruginosa

 26% id,
51% cov

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

 25% id,
52% cov

Q5H4T8: cystathionine gamma-lyase (EC 4.4.1.1) from Xanthomonas oryzae

 26% id,
50% cov

HSERO_RS10455: aminotransferase
is similar to:		 PaperBLAST

metB / P56069: cystathionine gamma-lyase (EC 4.4.1.1) from Helicobacter pylori

 28% id,
27% cov

HSERO_RS15115: aminotransferase
is similar to:		 PaperBLAST

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

 33% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3225018-3226469 (frame +3) on NC_014323
is similar to:		 PaperBLAST

Q5H4T8: cystathionine gamma-lyase (EC 4.4.1.1) from Xanthomonas oryzae
Also see hits to annotated proteins above

 26% id,
52% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory