Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 1 curated entries in PaperBLAST's database that match 'cystathionine-gamma-lyase' as complete word(s).
These curated entries have 1 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
HSERO_RS14995: cystathionine beta-lyase is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 32% id, 79% cov |
HSERO_RS18310: O-acetylhomoserine aminocarboxypropyltransferase is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 38% id, 48% cov |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 35% id, 42% cov |
HSERO_RS16440: hypothetical protein is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 30% id, 50% cov |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 36% id, 39% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
3405209-3406435 (frame -1) on NC_014323 is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 30% id, 95% cov |
3762356-3763750 (frame -1) on NC_014323 is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 30% id, 53% cov |
Lawrence Berkeley National Laboratory