Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 1 curated entries in PaperBLAST's database that match 'cytochrome%deoxyribose dehydrogenase' as complete word(s).
These curated entries have 1 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS16735: alcohol dehydrogenase is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 46% id, 98% cov |
| HSERO_RS22390: alcohol dehydrogenase is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 46% id, 90% cov |
| HSERO_RS22810: alcohol dehydrogenase is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 45% id, 87% cov |
| HSERO_RS06965: alcohol dehydrogenase is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 40% id, 94% cov |
| HSERO_RS18760: cytochrome C is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 36% id, 98% cov |
| HSERO_RS08315: cytochrome C is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 36% id, 90% cov |
| HSERO_RS06615: cytochrome protein is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 34% id, 91% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1585865-1587319 (frame -1) on NC_014323 is similar to: | PaperBLAST |
PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae | 39% id, 97% cov |
Lawrence Berkeley National Laboratory