Searching in Herbaspirillum seropedicae SmR1 (HerbieS)
Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 23 relevant proteins in Herbaspirillum seropedicae SmR1, or try another query
| HSERO_RS05805: MFS transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 41% id, 99% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 39% id, 93% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 38% id, 95% cov |
| HSERO_RS22270: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 40% id, 99% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 40% id, 98% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 37% id, 95% cov |
| HSERO_RS05735: MFS transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 41% id, 94% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 38% id, 96% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 35% id, 96% cov |
| HSERO_RS09170: MFS transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 39% id, 96% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 38% id, 93% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 36% id, 95% cov |
| HSERO_RS11250: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 39% id, 93% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 40% id, 92% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 37% id, 95% cov |
| HSERO_RS20280: MFS transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 37% id, 98% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 35% id, 94% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 35% id, 94% cov |
| HSERO_RS02695: major facilitator transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 36% id, 99% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 34% id, 97% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 35% id, 93% cov |
| HSERO_RS21145: MFS transporter is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 37% id, 94% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 37% id, 95% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 36% id, 95% cov |
| HSERO_RS22250: membrane protein is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 36% id, 96% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 36% id, 92% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 32% id, 97% cov |
| HSERO_RS20520: hexuronate transporter ExuT is similar to: | PaperBLAST |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 27% id, 92% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 25% id, 92% cov |
| HSERO_RS15805: glucarate transporter is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 25% id, 96% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 22% id, 96% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 22% id, 92% cov |
| HSERO_RS02645: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 24% id, 100% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 23% id, 91% cov |
| HSERO_RS21865: MFS transporter is similar to: | PaperBLAST |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 24% id, 93% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 23% id, 94% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 23% id, 92% cov |
| HSERO_RS02860: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 23% id, 94% cov |
| HSERO_RS23010: hexuronate transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 24% id, 90% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 23% id, 90% cov |
| HSERO_RS05760: MFS transporter is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 24% id, 90% cov |
| HSERO_RS19465: major facilitator transporter is similar to: | PaperBLAST |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 22% id, 94% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 28% id, 43% cov |
| HSERO_RS22300: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 22% id, 94% cov |
| HSERO_RS02920: major facilitator superfamily protein is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 23% id, 89% cov |
| HSERO_RS06575: major facilitator transporter is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 24% id, 86% cov |
| HSERO_RS16355: DSBA oxidoreductase is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 21% id, 93% cov |
| HSERO_RS05365: transporter is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 21% id, 37% cov |
| HSERO_RS22985: MFS transporter is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 26% id, 27% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 20 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory